Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04695 and BPHYT_RS04700 are separated by 90 nucleotides BPHYT_RS04700 and BPHYT_RS04705 are separated by 33 nucleotides
BPHYT_RS04695: BPHYT_RS04695 - ABC transporter substrate-binding protein, at 1,085,767 to 1,086,729
_RS04695
BPHYT_RS04700: BPHYT_RS04700 - AP endonuclease, at 1,086,820 to 1,087,869
_RS04700
BPHYT_RS04705: BPHYT_RS04705 - oxidoreductase, at 1,087,903 to 1,089,057
_RS04705
Position (kb) 1086
1087
1088 Strain fitness (log2 ratio) -1
0
1
2
3 at 1086.115 kb on + strand, within BPHYT_RS04695 at 1086.166 kb on + strand, within BPHYT_RS04695 at 1086.166 kb on + strand, within BPHYT_RS04695 at 1086.301 kb on - strand, within BPHYT_RS04695 at 1086.394 kb on + strand, within BPHYT_RS04695 at 1087.094 kb on - strand, within BPHYT_RS04700 at 1087.519 kb on + strand, within BPHYT_RS04700 at 1087.520 kb on - strand, within BPHYT_RS04700 at 1087.520 kb on - strand, within BPHYT_RS04700 at 1087.589 kb on - strand, within BPHYT_RS04700 at 1087.589 kb on - strand, within BPHYT_RS04700 at 1087.589 kb on - strand, within BPHYT_RS04700 at 1087.598 kb on - strand, within BPHYT_RS04700 at 1087.895 kb on + strand at 1087.896 kb on - strand at 1088.305 kb on - strand, within BPHYT_RS04705 at 1088.305 kb on - strand, within BPHYT_RS04705 at 1088.309 kb on - strand, within BPHYT_RS04705 at 1088.309 kb on - strand, within BPHYT_RS04705 at 1088.574 kb on + strand, within BPHYT_RS04705 at 1088.704 kb on + strand, within BPHYT_RS04705
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,086,115 + BPHYT_RS04695 0.36 -0.1 1,086,166 + BPHYT_RS04695 0.41 -0.2 1,086,166 + BPHYT_RS04695 0.41 +0.4 1,086,301 - BPHYT_RS04695 0.55 +0.3 1,086,394 + BPHYT_RS04695 0.65 +1.5 1,087,094 - BPHYT_RS04700 0.26 -0.4 1,087,519 + BPHYT_RS04700 0.67 +1.1 1,087,520 - BPHYT_RS04700 0.67 -0.1 1,087,520 - BPHYT_RS04700 0.67 +2.8 1,087,589 - BPHYT_RS04700 0.73 +3.3 1,087,589 - BPHYT_RS04700 0.73 -0.5 1,087,589 - BPHYT_RS04700 0.73 -0.4 1,087,598 - BPHYT_RS04700 0.74 -0.2 1,087,895 + +1.0 1,087,896 - -0.5 1,088,305 - BPHYT_RS04705 0.35 -0.0 1,088,305 - BPHYT_RS04705 0.35 -0.8 1,088,309 - BPHYT_RS04705 0.35 -1.6 1,088,309 - BPHYT_RS04705 0.35 +0.3 1,088,574 + BPHYT_RS04705 0.58 -0.2 1,088,704 + BPHYT_RS04705 0.69 -1.2
Or see this region's nucleotide sequence