Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03085 and BPHYT_RS03090 are separated by 496 nucleotides BPHYT_RS03090 and BPHYT_RS03095 are separated by 117 nucleotides
BPHYT_RS03085: BPHYT_RS03085 - histidine kinase, at 687,338 to 691,645
_RS03085
BPHYT_RS03090: BPHYT_RS03090 - hypothetical protein, at 692,142 to 692,576
_RS03090
BPHYT_RS03095: BPHYT_RS03095 - alpha/beta hydrolase, at 692,694 to 693,650
_RS03095
Position (kb) 692
693 Strain fitness (log2 ratio) -2
-1
0
1
2 at 691.181 kb on + strand, within BPHYT_RS03085 at 691.182 kb on - strand, within BPHYT_RS03085 at 691.432 kb on + strand at 691.694 kb on - strand at 691.857 kb on - strand at 691.920 kb on + strand at 691.920 kb on + strand at 691.920 kb on + strand at 691.920 kb on + strand at 691.921 kb on - strand at 691.967 kb on + strand at 692.076 kb on + strand at 692.080 kb on - strand at 692.213 kb on + strand, within BPHYT_RS03090 at 692.337 kb on + strand, within BPHYT_RS03090 at 692.338 kb on - strand, within BPHYT_RS03090 at 692.621 kb on - strand at 692.621 kb on - strand at 692.621 kb on - strand at 692.659 kb on - strand at 692.958 kb on + strand, within BPHYT_RS03095 at 692.958 kb on + strand, within BPHYT_RS03095 at 692.959 kb on - strand, within BPHYT_RS03095 at 692.992 kb on + strand, within BPHYT_RS03095 at 692.992 kb on + strand, within BPHYT_RS03095 at 693.039 kb on + strand, within BPHYT_RS03095 at 693.040 kb on - strand, within BPHYT_RS03095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 691,181 + BPHYT_RS03085 0.89 +2.4 691,182 - BPHYT_RS03085 0.89 -0.8 691,432 + +1.0 691,694 - -0.7 691,857 - -0.4 691,920 + -0.5 691,920 + +0.3 691,920 + -0.9 691,920 + +0.9 691,921 - -1.1 691,967 + -0.7 692,076 + +1.7 692,080 - -0.1 692,213 + BPHYT_RS03090 0.16 -2.5 692,337 + BPHYT_RS03090 0.45 +0.1 692,338 - BPHYT_RS03090 0.45 -0.7 692,621 - -0.3 692,621 - -1.2 692,621 - -0.8 692,659 - -0.7 692,958 + BPHYT_RS03095 0.28 -1.2 692,958 + BPHYT_RS03095 0.28 +0.8 692,959 - BPHYT_RS03095 0.28 +0.1 692,992 + BPHYT_RS03095 0.31 +0.1 692,992 + BPHYT_RS03095 0.31 -0.3 693,039 + BPHYT_RS03095 0.36 -0.2 693,040 - BPHYT_RS03095 0.36 -0.1
Or see this region's nucleotide sequence