Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01765 and BPHYT_RS01770 are separated by 10 nucleotides BPHYT_RS01770 and BPHYT_RS01775 are separated by 378 nucleotides BPHYT_RS01775 and BPHYT_RS01780 overlap by 4 nucleotides
BPHYT_RS01765: BPHYT_RS01765 - carbon-monoxide dehydrogenase, at 401,180 to 403,561
_RS01765
BPHYT_RS01770: BPHYT_RS01770 - carbon monoxide dehydrogenase, at 403,572 to 404,090
_RS01770
BPHYT_RS01775: BPHYT_RS01775 - hypothetical protein, at 404,469 to 404,813
_RS01775
BPHYT_RS01780: BPHYT_RS01780 - hypothetical protein, at 404,810 to 405,178
_RS01780
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.573 kb on + strand, within BPHYT_RS01765 at 402.574 kb on - strand, within BPHYT_RS01765 at 402.894 kb on + strand, within BPHYT_RS01765 at 402.895 kb on - strand, within BPHYT_RS01765 at 402.903 kb on + strand, within BPHYT_RS01765 at 402.903 kb on + strand, within BPHYT_RS01765 at 402.904 kb on - strand, within BPHYT_RS01765 at 402.924 kb on + strand, within BPHYT_RS01765 at 403.057 kb on - strand, within BPHYT_RS01765 at 403.146 kb on + strand, within BPHYT_RS01765 at 403.365 kb on - strand at 403.479 kb on + strand at 403.506 kb on + strand at 403.507 kb on - strand at 403.516 kb on + strand at 403.516 kb on + strand at 403.516 kb on + strand at 403.517 kb on - strand at 404.202 kb on - strand at 404.226 kb on + strand at 404.305 kb on - strand at 404.307 kb on + strand at 404.307 kb on + strand at 404.308 kb on - strand at 404.335 kb on - strand at 404.406 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.426 kb on - strand at 404.470 kb on + strand at 404.588 kb on + strand, within BPHYT_RS01775 at 404.589 kb on - strand, within BPHYT_RS01775 at 404.596 kb on + strand, within BPHYT_RS01775 at 404.597 kb on - strand, within BPHYT_RS01775 at 404.705 kb on - strand, within BPHYT_RS01775 at 404.717 kb on + strand, within BPHYT_RS01775 at 404.718 kb on - strand, within BPHYT_RS01775 at 404.720 kb on + strand, within BPHYT_RS01775 at 404.721 kb on - strand, within BPHYT_RS01775 at 404.721 kb on - strand, within BPHYT_RS01775 at 404.820 kb on - strand at 404.867 kb on + strand, within BPHYT_RS01780 at 404.868 kb on - strand, within BPHYT_RS01780 at 404.868 kb on - strand, within BPHYT_RS01780 at 404.868 kb on - strand, within BPHYT_RS01780 at 404.876 kb on - strand, within BPHYT_RS01780 at 405.024 kb on - strand, within BPHYT_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 402,573 + BPHYT_RS01765 0.58 +0.5 402,574 - BPHYT_RS01765 0.59 +1.0 402,894 + BPHYT_RS01765 0.72 -1.2 402,895 - BPHYT_RS01765 0.72 -0.3 402,903 + BPHYT_RS01765 0.72 -1.5 402,903 + BPHYT_RS01765 0.72 +0.9 402,904 - BPHYT_RS01765 0.72 +1.7 402,924 + BPHYT_RS01765 0.73 -0.1 403,057 - BPHYT_RS01765 0.79 -0.4 403,146 + BPHYT_RS01765 0.83 -0.9 403,365 - -1.0 403,479 + -0.3 403,506 + +0.6 403,507 - +1.4 403,516 + -0.4 403,516 + -0.8 403,516 + -0.6 403,517 - +1.1 404,202 - +0.4 404,226 + +1.3 404,305 - -0.4 404,307 + +0.3 404,307 + +0.1 404,308 - +0.3 404,335 - +1.3 404,406 + +0.1 404,425 + -1.9 404,425 + +0.1 404,425 + -0.4 404,425 + -0.6 404,426 - +0.4 404,470 + +0.1 404,588 + BPHYT_RS01775 0.34 +0.8 404,589 - BPHYT_RS01775 0.35 +1.2 404,596 + BPHYT_RS01775 0.37 +0.6 404,597 - BPHYT_RS01775 0.37 +0.4 404,705 - BPHYT_RS01775 0.68 +0.8 404,717 + BPHYT_RS01775 0.72 +2.4 404,718 - BPHYT_RS01775 0.72 -0.1 404,720 + BPHYT_RS01775 0.73 -0.9 404,721 - BPHYT_RS01775 0.73 +0.6 404,721 - BPHYT_RS01775 0.73 -0.0 404,820 - +0.7 404,867 + BPHYT_RS01780 0.15 -0.9 404,868 - BPHYT_RS01780 0.16 -0.8 404,868 - BPHYT_RS01780 0.16 +2.4 404,868 - BPHYT_RS01780 0.16 -0.1 404,876 - BPHYT_RS01780 0.18 +0.1 405,024 - BPHYT_RS01780 0.58 -0.9
Or see this region's nucleotide sequence