Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00755 and BPHYT_RS00760 overlap by 8 nucleotides BPHYT_RS00760 and BPHYT_RS00765 overlap by 4 nucleotides BPHYT_RS00765 and BPHYT_RS00770 are separated by 37 nucleotides BPHYT_RS00770 and BPHYT_RS00775 are separated by 13 nucleotides BPHYT_RS00775 and BPHYT_RS00780 are separated by 19 nucleotides
BPHYT_RS00755: BPHYT_RS00755 - cobyric acid synthase CobQ, at 172,963 to 173,835
_RS00755
BPHYT_RS00760: BPHYT_RS00760 - hypothetical protein, at 173,828 to 174,412
_RS00760
BPHYT_RS00765: BPHYT_RS00765 - lytic transglycosylase, at 174,409 to 175,086
_RS00765
BPHYT_RS00770: BPHYT_RS00770 - conjugal transfer protein TraC, at 175,124 to 175,465
_RS00770
BPHYT_RS00775: BPHYT_RS00775 - conjugal transfer protein TraD, at 175,479 to 175,811
_RS00775
BPHYT_RS00780: BPHYT_RS00780 - type IV secretion protein VirB4, at 175,831 to 178,281
_RS00780
Position (kb) 174
175
176 Strain fitness (log2 ratio) -1
0
1
2
3 at 173.446 kb on + strand, within BPHYT_RS00755 at 173.446 kb on + strand, within BPHYT_RS00755 at 173.447 kb on - strand, within BPHYT_RS00755 at 173.447 kb on - strand, within BPHYT_RS00755 at 173.643 kb on + strand, within BPHYT_RS00755 at 173.644 kb on - strand, within BPHYT_RS00755 at 174.023 kb on + strand, within BPHYT_RS00760 at 174.254 kb on + strand, within BPHYT_RS00760 at 174.254 kb on + strand, within BPHYT_RS00760 at 174.309 kb on - strand, within BPHYT_RS00760 at 174.336 kb on - strand, within BPHYT_RS00760 at 174.336 kb on - strand, within BPHYT_RS00760 at 174.515 kb on - strand, within BPHYT_RS00765 at 174.613 kb on + strand, within BPHYT_RS00765 at 174.614 kb on - strand, within BPHYT_RS00765 at 174.635 kb on + strand, within BPHYT_RS00765 at 174.806 kb on - strand, within BPHYT_RS00765 at 174.806 kb on - strand, within BPHYT_RS00765 at 174.935 kb on + strand, within BPHYT_RS00765 at 174.935 kb on + strand, within BPHYT_RS00765 at 174.936 kb on - strand, within BPHYT_RS00765 at 175.306 kb on + strand at 175.398 kb on + strand, within BPHYT_RS00770 at 175.780 kb on - strand at 175.841 kb on + strand at 175.859 kb on + strand at 175.927 kb on + strand at 175.927 kb on + strand at 175.928 kb on - strand at 175.928 kb on - strand at 175.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 173,446 + BPHYT_RS00755 0.55 -0.5 173,446 + BPHYT_RS00755 0.55 +0.5 173,447 - BPHYT_RS00755 0.55 -0.0 173,447 - BPHYT_RS00755 0.55 -0.3 173,643 + BPHYT_RS00755 0.78 +3.3 173,644 - BPHYT_RS00755 0.78 +0.5 174,023 + BPHYT_RS00760 0.33 -0.7 174,254 + BPHYT_RS00760 0.73 +0.6 174,254 + BPHYT_RS00760 0.73 +0.9 174,309 - BPHYT_RS00760 0.82 -0.9 174,336 - BPHYT_RS00760 0.87 -0.4 174,336 - BPHYT_RS00760 0.87 +0.4 174,515 - BPHYT_RS00765 0.16 -0.1 174,613 + BPHYT_RS00765 0.30 -1.2 174,614 - BPHYT_RS00765 0.30 -1.6 174,635 + BPHYT_RS00765 0.33 +0.4 174,806 - BPHYT_RS00765 0.59 -0.4 174,806 - BPHYT_RS00765 0.59 +0.4 174,935 + BPHYT_RS00765 0.78 -0.3 174,935 + BPHYT_RS00765 0.78 -0.0 174,936 - BPHYT_RS00765 0.78 -0.3 175,306 + +2.0 175,398 + BPHYT_RS00770 0.80 +0.8 175,780 - -0.0 175,841 + +2.2 175,859 + -0.4 175,927 + +0.6 175,927 + +0.4 175,928 - +2.2 175,928 - -1.1 175,928 - +0.6
Or see this region's nucleotide sequence