Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00730 and BPHYT_RS00735 are separated by 251 nucleotides BPHYT_RS00735 and BPHYT_RS00740 overlap by 4 nucleotides BPHYT_RS00740 and BPHYT_RS00745 are separated by 290 nucleotides
BPHYT_RS00730: BPHYT_RS00730 - porin, at 169,621 to 170,655
_RS00730
BPHYT_RS00735: BPHYT_RS00735 - AlpA family transcriptional regulator, at 170,907 to 171,149
_RS00735
BPHYT_RS00740: BPHYT_RS00740 - hypothetical protein, at 171,146 to 171,472
_RS00740
BPHYT_RS00745: BPHYT_RS00745 - transcriptional regulator, at 171,763 to 172,167
_RS00745
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 169.912 kb on + strand, within BPHYT_RS00730 at 170.140 kb on + strand, within BPHYT_RS00730 at 170.182 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.224 kb on + strand, within BPHYT_RS00730 at 170.225 kb on - strand, within BPHYT_RS00730 at 170.242 kb on + strand, within BPHYT_RS00730 at 170.383 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.465 kb on + strand, within BPHYT_RS00730 at 170.466 kb on - strand at 170.591 kb on - strand at 170.654 kb on - strand at 170.764 kb on + strand at 170.765 kb on - strand at 170.925 kb on - strand at 170.925 kb on - strand at 170.991 kb on + strand, within BPHYT_RS00735 at 170.992 kb on - strand, within BPHYT_RS00735 at 170.999 kb on + strand, within BPHYT_RS00735 at 171.000 kb on - strand, within BPHYT_RS00735 at 171.000 kb on - strand, within BPHYT_RS00735 at 171.299 kb on + strand, within BPHYT_RS00740 at 171.299 kb on + strand, within BPHYT_RS00740 at 171.300 kb on - strand, within BPHYT_RS00740 at 171.300 kb on - strand, within BPHYT_RS00740 at 171.529 kb on + strand at 171.530 kb on - strand at 171.530 kb on - strand at 171.533 kb on + strand at 171.533 kb on + strand at 171.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 169,912 + BPHYT_RS00730 0.28 +0.3 170,140 + BPHYT_RS00730 0.50 +0.6 170,182 + BPHYT_RS00730 0.54 +0.1 170,224 + BPHYT_RS00730 0.58 -0.3 170,224 + BPHYT_RS00730 0.58 +2.8 170,224 + BPHYT_RS00730 0.58 -0.6 170,224 + BPHYT_RS00730 0.58 -0.1 170,224 + BPHYT_RS00730 0.58 -0.4 170,224 + BPHYT_RS00730 0.58 +0.7 170,225 - BPHYT_RS00730 0.58 +0.3 170,242 + BPHYT_RS00730 0.60 -0.1 170,383 + BPHYT_RS00730 0.74 +0.5 170,465 + BPHYT_RS00730 0.82 -1.3 170,465 + BPHYT_RS00730 0.82 -1.0 170,465 + BPHYT_RS00730 0.82 +0.4 170,465 + BPHYT_RS00730 0.82 -0.8 170,466 - -1.0 170,591 - -1.0 170,654 - -1.1 170,764 + -0.2 170,765 - +0.5 170,925 - +1.4 170,925 - +0.3 170,991 + BPHYT_RS00735 0.35 +0.0 170,992 - BPHYT_RS00735 0.35 +1.9 170,999 + BPHYT_RS00735 0.38 +0.3 171,000 - BPHYT_RS00735 0.38 +0.1 171,000 - BPHYT_RS00735 0.38 +0.2 171,299 + BPHYT_RS00740 0.47 +0.6 171,299 + BPHYT_RS00740 0.47 -0.0 171,300 - BPHYT_RS00740 0.47 -0.5 171,300 - BPHYT_RS00740 0.47 -0.1 171,529 + -2.8 171,530 - +0.3 171,530 - -0.1 171,533 + -0.5 171,533 + -1.1 171,664 - -0.9
Or see this region's nucleotide sequence