Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34625 and BPHYT_RS34630 are separated by 63 nucleotides BPHYT_RS34630 and BPHYT_RS34635 are separated by 212 nucleotides BPHYT_RS34635 and BPHYT_RS34640 are separated by 13 nucleotides BPHYT_RS34640 and BPHYT_RS34645 are separated by 108 nucleotides
BPHYT_RS34625: BPHYT_RS34625 - hypothetical protein, at 3,377,637 to 3,377,993
_RS34625
BPHYT_RS34630: BPHYT_RS34630 - hypothetical protein, at 3,378,057 to 3,378,575
_RS34630
BPHYT_RS34635: BPHYT_RS34635 - 50S ribosomal protein L21, at 3,378,788 to 3,379,267
_RS34635
BPHYT_RS34640: BPHYT_RS34640 - TetR family transcriptional regulator, at 3,379,281 to 3,379,946
_RS34640
BPHYT_RS34645: BPHYT_RS34645 - hypothetical protein, at 3,380,055 to 3,380,705
_RS34645
Position (kb) 3378
3379
3380 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3377.877 kb on - strand, within BPHYT_RS34625 at 3377.912 kb on + strand, within BPHYT_RS34625 at 3377.929 kb on + strand, within BPHYT_RS34625 at 3377.930 kb on - strand, within BPHYT_RS34625 at 3378.036 kb on - strand at 3378.151 kb on + strand, within BPHYT_RS34630 at 3378.151 kb on + strand, within BPHYT_RS34630 at 3378.220 kb on + strand, within BPHYT_RS34630 at 3378.221 kb on - strand, within BPHYT_RS34630 at 3378.225 kb on - strand, within BPHYT_RS34630 at 3378.225 kb on - strand, within BPHYT_RS34630 at 3378.225 kb on - strand, within BPHYT_RS34630 at 3378.225 kb on - strand, within BPHYT_RS34630 at 3378.226 kb on + strand, within BPHYT_RS34630 at 3378.308 kb on - strand, within BPHYT_RS34630 at 3378.311 kb on - strand, within BPHYT_RS34630 at 3378.439 kb on + strand, within BPHYT_RS34630 at 3378.611 kb on + strand at 3378.611 kb on + strand at 3378.612 kb on - strand at 3378.628 kb on + strand at 3378.628 kb on + strand at 3378.628 kb on + strand at 3378.628 kb on + strand at 3378.629 kb on - strand at 3378.629 kb on - strand at 3378.629 kb on - strand at 3378.849 kb on + strand, within BPHYT_RS34635 at 3378.984 kb on + strand, within BPHYT_RS34635 at 3378.985 kb on - strand, within BPHYT_RS34635 at 3379.270 kb on + strand at 3379.271 kb on - strand at 3379.793 kb on - strand, within BPHYT_RS34640 at 3379.865 kb on - strand, within BPHYT_RS34640 at 3379.948 kb on + strand at 3379.949 kb on - strand at 3380.019 kb on + strand at 3380.020 kb on - strand at 3380.020 kb on - strand at 3380.148 kb on - strand, within BPHYT_RS34645 at 3380.148 kb on - strand, within BPHYT_RS34645 at 3380.154 kb on - strand, within BPHYT_RS34645 at 3380.247 kb on + strand, within BPHYT_RS34645 at 3380.248 kb on - strand, within BPHYT_RS34645
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 3,377,877 - BPHYT_RS34625 0.67 +0.3 3,377,912 + BPHYT_RS34625 0.77 -0.3 3,377,929 + BPHYT_RS34625 0.82 -3.3 3,377,930 - BPHYT_RS34625 0.82 -0.2 3,378,036 - +0.7 3,378,151 + BPHYT_RS34630 0.18 +0.4 3,378,151 + BPHYT_RS34630 0.18 +1.3 3,378,220 + BPHYT_RS34630 0.31 -0.4 3,378,221 - BPHYT_RS34630 0.32 +0.7 3,378,225 - BPHYT_RS34630 0.32 +0.2 3,378,225 - BPHYT_RS34630 0.32 -0.0 3,378,225 - BPHYT_RS34630 0.32 -0.1 3,378,225 - BPHYT_RS34630 0.32 -1.2 3,378,226 + BPHYT_RS34630 0.33 -0.9 3,378,308 - BPHYT_RS34630 0.48 -0.3 3,378,311 - BPHYT_RS34630 0.49 -0.3 3,378,439 + BPHYT_RS34630 0.74 -0.6 3,378,611 + -0.3 3,378,611 + -0.1 3,378,612 - +1.0 3,378,628 + +1.1 3,378,628 + +0.7 3,378,628 + +0.2 3,378,628 + +0.2 3,378,629 - -2.3 3,378,629 - -1.7 3,378,629 - +0.6 3,378,849 + BPHYT_RS34635 0.13 -0.3 3,378,984 + BPHYT_RS34635 0.41 +0.8 3,378,985 - BPHYT_RS34635 0.41 +0.9 3,379,270 + -0.0 3,379,271 - +0.5 3,379,793 - BPHYT_RS34640 0.77 +0.7 3,379,865 - BPHYT_RS34640 0.88 +0.6 3,379,948 + +0.7 3,379,949 - -0.8 3,380,019 + -1.2 3,380,020 - +0.3 3,380,020 - +1.7 3,380,148 - BPHYT_RS34645 0.14 +0.0 3,380,148 - BPHYT_RS34645 0.14 -0.2 3,380,154 - BPHYT_RS34645 0.15 -0.3 3,380,247 + BPHYT_RS34645 0.29 +1.2 3,380,248 - BPHYT_RS34645 0.30 -1.3
Or see this region's nucleotide sequence