Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31405

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31400 and BPHYT_RS31405 are separated by 373 nucleotidesBPHYT_RS31405 and BPHYT_RS31410 are separated by 32 nucleotides BPHYT_RS31400: BPHYT_RS31400 - methyl-accepting chemotaxis protein, at 2,598,795 to 2,600,540 _RS31400 BPHYT_RS31405: BPHYT_RS31405 - short-chain dehydrogenase, at 2,600,914 to 2,601,597 _RS31405 BPHYT_RS31410: BPHYT_RS31410 - D-amino acid oxidase, at 2,601,630 to 2,602,970 _RS31410 Position (kb) 2600 2601 2602Strain fitness (log2 ratio) -1 0 1 2 3at 2600.222 kb on - strand, within BPHYT_RS31400at 2600.641 kb on + strandat 2600.642 kb on - strandat 2600.668 kb on - strandat 2601.290 kb on - strand, within BPHYT_RS31405

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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2,600,222 - BPHYT_RS31400 0.82 +3.1
2,600,641 + +0.2
2,600,642 - +0.6
2,600,668 - +0.4
2,601,290 - BPHYT_RS31405 0.55 -0.3

Or see this region's nucleotide sequence