Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29440

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29435 and BPHYT_RS29440 are separated by 133 nucleotidesBPHYT_RS29440 and BPHYT_RS29445 are separated by 6 nucleotidesBPHYT_RS29445 and BPHYT_RS29450 are separated by 2 nucleotides BPHYT_RS29435: BPHYT_RS29435 - amidohydrolase, at 2,158,617 to 2,159,807 _RS29435 BPHYT_RS29440: BPHYT_RS29440 - LysR family transcriptional regulator, at 2,159,941 to 2,160,849 _RS29440 BPHYT_RS29445: BPHYT_RS29445 - ribose 1,5-bisphosphate phosphokinase, at 2,160,856 to 2,161,410 _RS29445 BPHYT_RS29450: BPHYT_RS29450 - phosphonate metabolism protein, at 2,161,413 to 2,162,135 _RS29450 Position (kb) 2159 2160 2161Strain fitness (log2 ratio) -2 -1 0 1at 2159.926 kb on + strandat 2161.296 kb on + strand, within BPHYT_RS29445

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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2,159,926 + -1.9
2,161,296 + BPHYT_RS29445 0.79 -1.3

Or see this region's nucleotide sequence