Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28630 and BPHYT_RS28635 are separated by 87 nucleotides BPHYT_RS28635 and BPHYT_RS28640 are separated by 463 nucleotides BPHYT_RS28640 and BPHYT_RS28645 are separated by 1 nucleotides BPHYT_RS28645 and BPHYT_RS28650 overlap by 16 nucleotides
BPHYT_RS28630: BPHYT_RS28630 - IclR family transcriptional regulator, at 1,977,819 to 1,978,610
_RS28630
BPHYT_RS28635: BPHYT_RS28635 - hypothetical protein, at 1,978,698 to 1,978,919
_RS28635
BPHYT_RS28640: BPHYT_RS28640 - ATPase, at 1,979,383 to 1,981,047
_RS28640
BPHYT_RS28645: BPHYT_RS28645 - serine/threonine protein kinase, at 1,981,049 to 1,982,041
_RS28645
BPHYT_RS28650: BPHYT_RS28650 - anti-sigma regulatory factor, at 1,982,026 to 1,982,436
_RS28650
Position (kb) 1979
1980
1981
1982 Strain fitness (log2 ratio) -2
-1
0
1 at 1978.388 kb on - strand, within BPHYT_RS28630 at 1978.417 kb on + strand, within BPHYT_RS28630 at 1978.589 kb on + strand at 1978.699 kb on + strand at 1978.852 kb on - strand, within BPHYT_RS28635 at 1978.852 kb on - strand, within BPHYT_RS28635 at 1979.035 kb on + strand at 1979.335 kb on - strand at 1979.776 kb on - strand, within BPHYT_RS28640 at 1979.803 kb on + strand, within BPHYT_RS28640 at 1980.103 kb on - strand, within BPHYT_RS28640 at 1980.103 kb on - strand, within BPHYT_RS28640 at 1980.103 kb on - strand, within BPHYT_RS28640 at 1980.948 kb on + strand at 1981.075 kb on + strand at 1981.075 kb on + strand at 1981.505 kb on - strand, within BPHYT_RS28645 at 1981.698 kb on + strand, within BPHYT_RS28645 at 1981.714 kb on + strand, within BPHYT_RS28645 at 1981.844 kb on - strand, within BPHYT_RS28645 at 1981.844 kb on - strand, within BPHYT_RS28645 at 1981.858 kb on - strand, within BPHYT_RS28645 at 1981.890 kb on + strand, within BPHYT_RS28645 at 1981.891 kb on - strand, within BPHYT_RS28645 at 1981.898 kb on + strand, within BPHYT_RS28645 at 1981.900 kb on + strand, within BPHYT_RS28645 at 1982.046 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,978,388 - BPHYT_RS28630 0.72 -0.6 1,978,417 + BPHYT_RS28630 0.76 +0.3 1,978,589 + -0.9 1,978,699 + +0.9 1,978,852 - BPHYT_RS28635 0.69 +0.5 1,978,852 - BPHYT_RS28635 0.69 +1.5 1,979,035 + -2.0 1,979,335 - -1.4 1,979,776 - BPHYT_RS28640 0.24 +0.1 1,979,803 + BPHYT_RS28640 0.25 -1.0 1,980,103 - BPHYT_RS28640 0.43 -0.2 1,980,103 - BPHYT_RS28640 0.43 -0.5 1,980,103 - BPHYT_RS28640 0.43 -0.2 1,980,948 + +0.7 1,981,075 + -1.6 1,981,075 + -1.8 1,981,505 - BPHYT_RS28645 0.46 -0.6 1,981,698 + BPHYT_RS28645 0.65 -2.0 1,981,714 + BPHYT_RS28645 0.67 -0.3 1,981,844 - BPHYT_RS28645 0.80 -1.0 1,981,844 - BPHYT_RS28645 0.80 +0.0 1,981,858 - BPHYT_RS28645 0.81 -0.7 1,981,890 + BPHYT_RS28645 0.85 -1.2 1,981,891 - BPHYT_RS28645 0.85 -1.0 1,981,898 + BPHYT_RS28645 0.85 +1.0 1,981,900 + BPHYT_RS28645 0.86 -0.1 1,982,046 + -0.2
Or see this region's nucleotide sequence