Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27195 and BPHYT_RS27200 are separated by 68 nucleotides BPHYT_RS27200 and BPHYT_RS27205 overlap by 4 nucleotides BPHYT_RS27205 and BPHYT_RS27210 are separated by 13 nucleotides
BPHYT_RS27195: BPHYT_RS27195 - LacI family transcriptional regulator, at 1,678,952 to 1,679,899
_RS27195
BPHYT_RS27200: BPHYT_RS27200 - pyridoxal 4-dehydrogenase, at 1,679,968 to 1,680,984
_RS27200
BPHYT_RS27205: BPHYT_RS27205 - amidohydrolase, at 1,680,981 to 1,681,853
_RS27205
BPHYT_RS27210: BPHYT_RS27210 - alcohol dehydrogenase, at 1,681,867 to 1,682,874
_RS27210
Position (kb) 1679
1680
1681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1679.067 kb on - strand, within BPHYT_RS27195 at 1679.278 kb on + strand, within BPHYT_RS27195 at 1679.484 kb on - strand, within BPHYT_RS27195 at 1679.772 kb on - strand, within BPHYT_RS27195 at 1680.055 kb on + strand at 1680.142 kb on + strand, within BPHYT_RS27200 at 1680.210 kb on - strand, within BPHYT_RS27200 at 1680.311 kb on - strand, within BPHYT_RS27200 at 1680.312 kb on + strand, within BPHYT_RS27200 at 1680.386 kb on - strand, within BPHYT_RS27200 at 1680.592 kb on + strand, within BPHYT_RS27200 at 1680.845 kb on + strand, within BPHYT_RS27200 at 1681.100 kb on + strand, within BPHYT_RS27205 at 1681.637 kb on - strand, within BPHYT_RS27205
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,679,067 - BPHYT_RS27195 0.12 +2.9 1,679,278 + BPHYT_RS27195 0.34 +0.9 1,679,484 - BPHYT_RS27195 0.56 -1.0 1,679,772 - BPHYT_RS27195 0.86 +0.7 1,680,055 + +0.6 1,680,142 + BPHYT_RS27200 0.17 -0.0 1,680,210 - BPHYT_RS27200 0.24 -3.9 1,680,311 - BPHYT_RS27200 0.34 -1.6 1,680,312 + BPHYT_RS27200 0.34 -0.6 1,680,386 - BPHYT_RS27200 0.41 -0.2 1,680,592 + BPHYT_RS27200 0.61 +0.1 1,680,845 + BPHYT_RS27200 0.86 -1.5 1,681,100 + BPHYT_RS27205 0.14 +1.3 1,681,637 - BPHYT_RS27205 0.75 +0.0
Or see this region's nucleotide sequence