Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23010

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23005 and BPHYT_RS23010 are separated by 113 nucleotidesBPHYT_RS23010 and BPHYT_RS23015 are separated by 59 nucleotides BPHYT_RS23005: BPHYT_RS23005 - carboxymuconolactone decarboxylase, at 721,638 to 722,186 _RS23005 BPHYT_RS23010: BPHYT_RS23010 - transcriptional regulator, at 722,300 to 723,157 _RS23010 BPHYT_RS23015: BPHYT_RS23015 - porin, at 723,217 to 724,410 _RS23015 Position (kb) 722 723 724Strain fitness (log2 ratio) -1 0 1at 721.420 kb on + strandat 721.544 kb on + strandat 721.545 kb on - strandat 722.194 kb on - strandat 722.482 kb on + strand, within BPHYT_RS23010at 722.518 kb on + strand, within BPHYT_RS23010at 723.473 kb on + strand, within BPHYT_RS23015at 723.473 kb on + strand, within BPHYT_RS23015at 723.902 kb on + strand, within BPHYT_RS23015at 723.903 kb on - strand, within BPHYT_RS23015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
remove
721,420 + -0.0
721,544 + -0.3
721,545 - +0.1
722,194 - -0.8
722,482 + BPHYT_RS23010 0.21 +1.1
722,518 + BPHYT_RS23010 0.25 +0.7
723,473 + BPHYT_RS23015 0.21 -1.3
723,473 + BPHYT_RS23015 0.21 +0.4
723,902 + BPHYT_RS23015 0.57 +1.1
723,903 - BPHYT_RS23015 0.57 +1.1

Or see this region's nucleotide sequence