Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21380 and BPHYT_RS21385 are separated by 206 nucleotides BPHYT_RS21385 and BPHYT_RS21390 are separated by 266 nucleotides
BPHYT_RS21380: BPHYT_RS21380 - nuclease PIN, at 355,696 to 357,282
_RS21380
BPHYT_RS21385: BPHYT_RS21385 - short-chain dehydrogenase, at 357,489 to 358,082
_RS21385
BPHYT_RS21390: BPHYT_RS21390 - metal-binding protein, at 358,349 to 359,230
_RS21390
Position (kb) 357
358
359 Strain fitness (log2 ratio) -1
0
1
2 at 356.601 kb on - strand, within BPHYT_RS21380 at 357.167 kb on - strand at 357.182 kb on + strand at 357.935 kb on - strand, within BPHYT_RS21385 at 358.082 kb on + strand at 358.246 kb on - strand at 358.439 kb on + strand, within BPHYT_RS21390 at 358.440 kb on - strand, within BPHYT_RS21390 at 358.608 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.611 kb on - strand, within BPHYT_RS21390 at 358.611 kb on - strand, within BPHYT_RS21390 at 358.612 kb on + strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.946 kb on + strand, within BPHYT_RS21390 at 358.947 kb on - strand, within BPHYT_RS21390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 356,601 - BPHYT_RS21380 0.57 +0.1 357,167 - -0.1 357,182 + +0.0 357,935 - BPHYT_RS21385 0.75 -1.1 358,082 + +0.2 358,246 - -0.8 358,439 + BPHYT_RS21390 0.10 +0.9 358,440 - BPHYT_RS21390 0.10 -0.3 358,608 + BPHYT_RS21390 0.29 +0.7 358,610 + BPHYT_RS21390 0.30 -0.2 358,610 + BPHYT_RS21390 0.30 +0.4 358,610 + BPHYT_RS21390 0.30 -0.1 358,610 + BPHYT_RS21390 0.30 -0.7 358,611 - BPHYT_RS21390 0.30 -0.3 358,611 - BPHYT_RS21390 0.30 +1.9 358,612 + BPHYT_RS21390 0.30 +0.5 358,613 - BPHYT_RS21390 0.30 -0.5 358,613 - BPHYT_RS21390 0.30 +0.5 358,613 - BPHYT_RS21390 0.30 -0.3 358,946 + BPHYT_RS21390 0.68 +0.7 358,947 - BPHYT_RS21390 0.68 +2.0
Or see this region's nucleotide sequence