Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20775

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20770 and BPHYT_RS20775 are separated by 7 nucleotidesBPHYT_RS20775 and BPHYT_RS20780 overlap by 4 nucleotides BPHYT_RS20770: BPHYT_RS20770 - hypothetical protein, at 221,214 to 222,383 _RS20770 BPHYT_RS20775: BPHYT_RS20775 - 3-ketoacyl-ACP reductase, at 222,391 to 223,170 _RS20775 BPHYT_RS20780: BPHYT_RS20780 - acyl-CoA dehydrogenase, at 223,167 to 224,312 _RS20780 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1at 221.698 kb on - strand, within BPHYT_RS20770at 222.306 kb on + strandat 222.306 kb on + strandat 222.396 kb on - strandat 222.683 kb on + strand, within BPHYT_RS20775at 222.684 kb on - strand, within BPHYT_RS20775at 222.887 kb on - strand, within BPHYT_RS20775at 223.208 kb on + strandat 223.954 kb on + strand, within BPHYT_RS20780at 223.993 kb on + strand, within BPHYT_RS20780

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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221,698 - BPHYT_RS20770 0.41 +0.8
222,306 + +0.1
222,306 + -0.0
222,396 - -0.9
222,683 + BPHYT_RS20775 0.37 +1.6
222,684 - BPHYT_RS20775 0.38 +1.6
222,887 - BPHYT_RS20775 0.64 -1.2
223,208 + -2.0
223,954 + BPHYT_RS20780 0.69 -0.2
223,993 + BPHYT_RS20780 0.72 +0.2

Or see this region's nucleotide sequence