Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20610 and BPHYT_RS20615 are separated by 165 nucleotides BPHYT_RS20615 and BPHYT_RS20620 are separated by 40 nucleotides BPHYT_RS20620 and BPHYT_RS20625 are separated by 60 nucleotides
BPHYT_RS20610: BPHYT_RS20610 - LysR family transcriptional regulator, at 182,877 to 183,788
_RS20610
BPHYT_RS20615: BPHYT_RS20615 - 2-nitropropane dioxygenase, at 183,954 to 185,054
_RS20615
BPHYT_RS20620: BPHYT_RS20620 - 4-oxalocrotonate tautomerase, at 185,095 to 185,331
_RS20620
BPHYT_RS20625: BPHYT_RS20625 - 3-oxoacyl-ACP reductase, at 185,392 to 186,102
_RS20625
Position (kb) 183
184
185
186 Strain fitness (log2 ratio) -1
0
1
2 at 183.043 kb on + strand, within BPHYT_RS20610 at 183.112 kb on + strand, within BPHYT_RS20610 at 183.113 kb on - strand, within BPHYT_RS20610 at 183.197 kb on - strand, within BPHYT_RS20610 at 183.466 kb on + strand, within BPHYT_RS20610 at 183.467 kb on - strand, within BPHYT_RS20610 at 183.578 kb on - strand, within BPHYT_RS20610 at 183.745 kb on - strand at 183.924 kb on + strand at 183.924 kb on + strand at 183.924 kb on + strand at 183.924 kb on + strand at 183.925 kb on - strand at 183.925 kb on - strand at 183.929 kb on + strand at 183.930 kb on - strand at 184.257 kb on + strand, within BPHYT_RS20615 at 184.294 kb on - strand, within BPHYT_RS20615 at 184.294 kb on - strand, within BPHYT_RS20615 at 184.499 kb on + strand, within BPHYT_RS20615 at 184.499 kb on + strand, within BPHYT_RS20615 at 184.863 kb on + strand, within BPHYT_RS20615 at 184.863 kb on + strand, within BPHYT_RS20615 at 185.059 kb on - strand at 185.325 kb on + strand at 185.609 kb on + strand, within BPHYT_RS20625 at 185.829 kb on - strand, within BPHYT_RS20625 at 185.829 kb on - strand, within BPHYT_RS20625
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 183,043 + BPHYT_RS20610 0.18 -0.6 183,112 + BPHYT_RS20610 0.26 -0.3 183,113 - BPHYT_RS20610 0.26 +0.4 183,197 - BPHYT_RS20610 0.35 -0.2 183,466 + BPHYT_RS20610 0.65 +1.2 183,467 - BPHYT_RS20610 0.65 +0.2 183,578 - BPHYT_RS20610 0.77 -1.1 183,745 - +0.5 183,924 + +1.7 183,924 + -0.7 183,924 + +0.5 183,924 + +0.7 183,925 - +0.4 183,925 - +0.8 183,929 + -0.3 183,930 - -0.8 184,257 + BPHYT_RS20615 0.28 -0.9 184,294 - BPHYT_RS20615 0.31 +2.1 184,294 - BPHYT_RS20615 0.31 -0.2 184,499 + BPHYT_RS20615 0.50 -0.6 184,499 + BPHYT_RS20615 0.50 -0.5 184,863 + BPHYT_RS20615 0.83 -0.2 184,863 + BPHYT_RS20615 0.83 -0.5 185,059 - +2.2 185,325 + -1.0 185,609 + BPHYT_RS20625 0.31 +0.8 185,829 - BPHYT_RS20625 0.61 +1.3 185,829 - BPHYT_RS20625 0.61 -0.4
Or see this region's nucleotide sequence