Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20615

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20610 and BPHYT_RS20615 are separated by 165 nucleotidesBPHYT_RS20615 and BPHYT_RS20620 are separated by 40 nucleotidesBPHYT_RS20620 and BPHYT_RS20625 are separated by 60 nucleotides BPHYT_RS20610: BPHYT_RS20610 - LysR family transcriptional regulator, at 182,877 to 183,788 _RS20610 BPHYT_RS20615: BPHYT_RS20615 - 2-nitropropane dioxygenase, at 183,954 to 185,054 _RS20615 BPHYT_RS20620: BPHYT_RS20620 - 4-oxalocrotonate tautomerase, at 185,095 to 185,331 _RS20620 BPHYT_RS20625: BPHYT_RS20625 - 3-oxoacyl-ACP reductase, at 185,392 to 186,102 _RS20625 Position (kb) 183 184 185 186Strain fitness (log2 ratio) -1 0 1 2at 183.043 kb on + strand, within BPHYT_RS20610at 183.112 kb on + strand, within BPHYT_RS20610at 183.113 kb on - strand, within BPHYT_RS20610at 183.197 kb on - strand, within BPHYT_RS20610at 183.466 kb on + strand, within BPHYT_RS20610at 183.467 kb on - strand, within BPHYT_RS20610at 183.578 kb on - strand, within BPHYT_RS20610at 183.745 kb on - strandat 183.924 kb on + strandat 183.924 kb on + strandat 183.924 kb on + strandat 183.924 kb on + strandat 183.925 kb on - strandat 183.925 kb on - strandat 183.929 kb on + strandat 183.930 kb on - strandat 184.257 kb on + strand, within BPHYT_RS20615at 184.294 kb on - strand, within BPHYT_RS20615at 184.294 kb on - strand, within BPHYT_RS20615at 184.499 kb on + strand, within BPHYT_RS20615at 184.499 kb on + strand, within BPHYT_RS20615at 184.863 kb on + strand, within BPHYT_RS20615at 184.863 kb on + strand, within BPHYT_RS20615at 185.059 kb on - strandat 185.325 kb on + strandat 185.609 kb on + strand, within BPHYT_RS20625at 185.829 kb on - strand, within BPHYT_RS20625at 185.829 kb on - strand, within BPHYT_RS20625

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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183,043 + BPHYT_RS20610 0.18 -0.6
183,112 + BPHYT_RS20610 0.26 -0.3
183,113 - BPHYT_RS20610 0.26 +0.4
183,197 - BPHYT_RS20610 0.35 -0.2
183,466 + BPHYT_RS20610 0.65 +1.2
183,467 - BPHYT_RS20610 0.65 +0.2
183,578 - BPHYT_RS20610 0.77 -1.1
183,745 - +0.5
183,924 + +1.7
183,924 + -0.7
183,924 + +0.5
183,924 + +0.7
183,925 - +0.4
183,925 - +0.8
183,929 + -0.3
183,930 - -0.8
184,257 + BPHYT_RS20615 0.28 -0.9
184,294 - BPHYT_RS20615 0.31 +2.1
184,294 - BPHYT_RS20615 0.31 -0.2
184,499 + BPHYT_RS20615 0.50 -0.6
184,499 + BPHYT_RS20615 0.50 -0.5
184,863 + BPHYT_RS20615 0.83 -0.2
184,863 + BPHYT_RS20615 0.83 -0.5
185,059 - +2.2
185,325 + -1.0
185,609 + BPHYT_RS20625 0.31 +0.8
185,829 - BPHYT_RS20625 0.61 +1.3
185,829 - BPHYT_RS20625 0.61 -0.4

Or see this region's nucleotide sequence