Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20510

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20505 and BPHYT_RS20510 are separated by 127 nucleotidesBPHYT_RS20510 and BPHYT_RS20515 are separated by 65 nucleotides BPHYT_RS20505: BPHYT_RS20505 - carboxymethylenebutenolidase, at 163,269 to 163,976 _RS20505 BPHYT_RS20510: BPHYT_RS20510 - oxidoreductase, at 164,104 to 164,850 _RS20510 BPHYT_RS20515: BPHYT_RS20515 - alpha/beta hydrolase, at 164,916 to 165,776 _RS20515 Position (kb) 164 165Strain fitness (log2 ratio) -1 0 1at 163.251 kb on + strandat 163.706 kb on + strand, within BPHYT_RS20505at 163.974 kb on + strandat 164.106 kb on - strandat 164.490 kb on - strand, within BPHYT_RS20510at 165.067 kb on + strand, within BPHYT_RS20515at 165.128 kb on - strand, within BPHYT_RS20515at 165.322 kb on + strand, within BPHYT_RS20515at 165.712 kb on + strandat 165.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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163,251 + -0.8
163,706 + BPHYT_RS20505 0.62 -0.9
163,974 + -1.0
164,106 - -0.1
164,490 - BPHYT_RS20510 0.52 -1.7
165,067 + BPHYT_RS20515 0.18 -1.2
165,128 - BPHYT_RS20515 0.25 -0.1
165,322 + BPHYT_RS20515 0.47 +0.5
165,712 + -0.1
165,832 + +1.0

Or see this region's nucleotide sequence