Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19120 and BPHYT_RS19125 overlap by 4 nucleotides BPHYT_RS19125 and BPHYT_RS19130 overlap by 1 nucleotides BPHYT_RS19130 and BPHYT_RS19135 are separated by 1 nucleotides
BPHYT_RS19120: BPHYT_RS19120 - 3-oxoacyl-ACP synthase, at 4,290,464 to 4,291,528
_RS19120
BPHYT_RS19125: BPHYT_RS19125 - short-chain dehydrogenase, at 4,291,525 to 4,292,289
_RS19125
BPHYT_RS19130: BPHYT_RS19130 - acetyltransferase, at 4,292,289 to 4,292,921
_RS19130
BPHYT_RS19135: BPHYT_RS19135 - Rieske (2Fe-2S) protein, at 4,292,923 to 4,293,912
_RS19135
Position (kb) 4291
4292
4293 Strain fitness (log2 ratio) -2
-1
0
1 at 4291.106 kb on + strand, within BPHYT_RS19120 at 4291.254 kb on - strand, within BPHYT_RS19120 at 4291.355 kb on + strand, within BPHYT_RS19120 at 4291.363 kb on + strand, within BPHYT_RS19120 at 4291.363 kb on + strand, within BPHYT_RS19120 at 4291.786 kb on - strand, within BPHYT_RS19125 at 4291.893 kb on + strand, within BPHYT_RS19125 at 4291.894 kb on - strand, within BPHYT_RS19125 at 4291.996 kb on + strand, within BPHYT_RS19125 at 4292.276 kb on - strand at 4292.433 kb on + strand, within BPHYT_RS19130 at 4292.467 kb on - strand, within BPHYT_RS19130 at 4292.727 kb on + strand, within BPHYT_RS19130 at 4292.727 kb on + strand, within BPHYT_RS19130 at 4292.727 kb on + strand, within BPHYT_RS19130 at 4292.896 kb on - strand at 4293.075 kb on + strand, within BPHYT_RS19135 at 4293.076 kb on - strand, within BPHYT_RS19135 at 4293.076 kb on - strand, within BPHYT_RS19135 at 4293.105 kb on + strand, within BPHYT_RS19135 at 4293.158 kb on - strand, within BPHYT_RS19135
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 4,291,106 + BPHYT_RS19120 0.60 -0.2 4,291,254 - BPHYT_RS19120 0.74 -1.3 4,291,355 + BPHYT_RS19120 0.84 -1.2 4,291,363 + BPHYT_RS19120 0.84 -1.2 4,291,363 + BPHYT_RS19120 0.84 -0.8 4,291,786 - BPHYT_RS19125 0.34 -1.2 4,291,893 + BPHYT_RS19125 0.48 -1.2 4,291,894 - BPHYT_RS19125 0.48 +0.8 4,291,996 + BPHYT_RS19125 0.62 -0.9 4,292,276 - -1.1 4,292,433 + BPHYT_RS19130 0.23 -0.8 4,292,467 - BPHYT_RS19130 0.28 -1.3 4,292,727 + BPHYT_RS19130 0.69 -0.0 4,292,727 + BPHYT_RS19130 0.69 -1.7 4,292,727 + BPHYT_RS19130 0.69 -1.3 4,292,896 - -2.6 4,293,075 + BPHYT_RS19135 0.15 -1.7 4,293,076 - BPHYT_RS19135 0.15 +0.2 4,293,076 - BPHYT_RS19135 0.15 -0.3 4,293,105 + BPHYT_RS19135 0.18 -2.0 4,293,158 - BPHYT_RS19135 0.24 +0.8
Or see this region's nucleotide sequence