Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18370 and BPHYT_RS18375 are separated by 128 nucleotides BPHYT_RS18375 and BPHYT_RS18380 are separated by 154 nucleotides BPHYT_RS18380 and BPHYT_RS18385 are separated by 224 nucleotides
BPHYT_RS18370: BPHYT_RS18370 - hypothetical protein, at 4,132,756 to 4,133,517
_RS18370
BPHYT_RS18375: BPHYT_RS18375 - hypothetical protein, at 4,133,646 to 4,133,924
_RS18375
BPHYT_RS18380: BPHYT_RS18380 - hypothetical protein, at 4,134,079 to 4,134,288
_RS18380
BPHYT_RS18385: BPHYT_RS18385 - 4-hydroxyphenylpyruvate dioxygenase, at 4,134,513 to 4,135,265
_RS18385
Position (kb) 4134
4135 Strain fitness (log2 ratio) -1
0
1
2
3 at 4133.113 kb on + strand, within BPHYT_RS18370 at 4133.114 kb on - strand, within BPHYT_RS18370 at 4133.114 kb on - strand, within BPHYT_RS18370 at 4133.196 kb on - strand, within BPHYT_RS18370 at 4133.228 kb on - strand, within BPHYT_RS18370 at 4133.313 kb on - strand, within BPHYT_RS18370 at 4133.410 kb on - strand, within BPHYT_RS18370 at 4133.515 kb on + strand at 4133.516 kb on - strand at 4133.516 kb on - strand at 4133.516 kb on - strand at 4133.609 kb on - strand at 4133.621 kb on + strand at 4133.621 kb on + strand at 4133.622 kb on - strand at 4133.625 kb on + strand at 4133.626 kb on - strand at 4133.626 kb on - strand at 4133.626 kb on - strand at 4134.066 kb on - strand at 4134.081 kb on - strand at 4134.081 kb on - strand at 4134.277 kb on - strand at 4134.332 kb on + strand at 4134.332 kb on + strand at 4134.391 kb on - strand at 4134.391 kb on - strand at 4134.391 kb on - strand at 4134.391 kb on - strand at 4134.394 kb on - strand at 4134.430 kb on + strand at 4134.430 kb on + strand at 4134.431 kb on - strand at 4134.431 kb on - strand at 4134.434 kb on + strand at 4134.434 kb on + strand at 4134.434 kb on + strand at 4134.434 kb on + strand at 4134.434 kb on + strand at 4134.434 kb on + strand at 4134.435 kb on - strand at 4134.435 kb on - strand at 4134.478 kb on - strand at 4134.488 kb on + strand at 4134.489 kb on - strand at 4134.489 kb on - strand at 4134.505 kb on - strand at 4134.571 kb on - strand at 4134.703 kb on + strand, within BPHYT_RS18385 at 4134.703 kb on + strand, within BPHYT_RS18385 at 4134.757 kb on + strand, within BPHYT_RS18385 at 4134.757 kb on + strand, within BPHYT_RS18385 at 4134.758 kb on - strand, within BPHYT_RS18385 at 4134.758 kb on - strand, within BPHYT_RS18385 at 4134.928 kb on + strand, within BPHYT_RS18385 at 4135.039 kb on + strand, within BPHYT_RS18385 at 4135.039 kb on + strand, within BPHYT_RS18385
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 4,133,113 + BPHYT_RS18370 0.47 -0.4 4,133,114 - BPHYT_RS18370 0.47 +1.3 4,133,114 - BPHYT_RS18370 0.47 -1.7 4,133,196 - BPHYT_RS18370 0.58 -1.1 4,133,228 - BPHYT_RS18370 0.62 +3.4 4,133,313 - BPHYT_RS18370 0.73 +0.7 4,133,410 - BPHYT_RS18370 0.86 +0.5 4,133,515 + +2.0 4,133,516 - +0.8 4,133,516 - +0.4 4,133,516 - +0.7 4,133,609 - -0.8 4,133,621 + -0.4 4,133,621 + +0.8 4,133,622 - -0.9 4,133,625 + +0.2 4,133,626 - +0.6 4,133,626 - -1.6 4,133,626 - +0.8 4,134,066 - +1.5 4,134,081 - -0.4 4,134,081 - -1.2 4,134,277 - +0.6 4,134,332 + +0.1 4,134,332 + +0.1 4,134,391 - +0.0 4,134,391 - -0.1 4,134,391 - +0.0 4,134,391 - +0.8 4,134,394 - +0.6 4,134,430 + +0.8 4,134,430 + +0.5 4,134,431 - -0.1 4,134,431 - +1.4 4,134,434 + -0.4 4,134,434 + +1.1 4,134,434 + +1.2 4,134,434 + +0.6 4,134,434 + +1.4 4,134,434 + -0.3 4,134,435 - +0.3 4,134,435 - +0.5 4,134,478 - +0.6 4,134,488 + +0.6 4,134,489 - +0.6 4,134,489 - +0.4 4,134,505 - +0.6 4,134,571 - -0.2 4,134,703 + BPHYT_RS18385 0.25 +0.5 4,134,703 + BPHYT_RS18385 0.25 -0.8 4,134,757 + BPHYT_RS18385 0.32 +1.8 4,134,757 + BPHYT_RS18385 0.32 -0.1 4,134,758 - BPHYT_RS18385 0.33 -0.2 4,134,758 - BPHYT_RS18385 0.33 +2.6 4,134,928 + BPHYT_RS18385 0.55 -0.8 4,135,039 + BPHYT_RS18385 0.70 +0.1 4,135,039 + BPHYT_RS18385 0.70 -0.8
Or see this region's nucleotide sequence