Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14425

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14415 and BPHYT_RS14420 are separated by 232 nucleotidesBPHYT_RS14420 and BPHYT_RS14425 are separated by 152 nucleotidesBPHYT_RS14425 and BPHYT_RS14430 are separated by 102 nucleotides BPHYT_RS14415: BPHYT_RS14415 - 3-oxoacyl-ACP synthase, at 3,288,750 to 3,289,988 _RS14415 BPHYT_RS14420: BPHYT_RS14420 - acyl carrier protein, at 3,290,221 to 3,290,460 _RS14420 BPHYT_RS14425: BPHYT_RS14425 - 3-ketoacyl-ACP reductase, at 3,290,613 to 3,291,362 _RS14425 BPHYT_RS14430: BPHYT_RS14430 - malonyl CoA-ACP transacylase, at 3,291,465 to 3,292,400 _RS14430 Position (kb) 3290 3291 3292Strain fitness (log2 ratio) -1 0 1at 3290.568 kb on - strandat 3290.576 kb on - strandat 3290.598 kb on - strandat 3291.459 kb on - strandat 3291.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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3,290,568 - +0.2
3,290,576 - -0.0
3,290,598 - -0.6
3,291,459 - +0.8
3,291,459 - -0.8

Or see this region's nucleotide sequence