Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12085

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12075 and BPHYT_RS12080 are separated by 3 nucleotidesBPHYT_RS12080 and BPHYT_RS12085 are separated by 128 nucleotidesBPHYT_RS12085 and BPHYT_RS12090 are separated by 209 nucleotides BPHYT_RS12075: BPHYT_RS12075 - lipid-A-disaccharide synthase, at 2,752,299 to 2,753,468 _RS12075 BPHYT_RS12080: BPHYT_RS12080 - acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 2,753,472 to 2,754,260 _RS12080 BPHYT_RS12085: BPHYT_RS12085 - 3-hydroxyacyl-ACP dehydratase, at 2,754,389 to 2,754,853 _RS12085 BPHYT_RS12090: BPHYT_RS12090 - UDP-3-O-acylglucosamine N-acyltransferase, at 2,755,063 to 2,756,175 _RS12090 Position (kb) 2754 2755Strain fitness (log2 ratio) -1 0 1at 2754.391 kb on - strandat 2754.918 kb on - strandat 2754.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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2,754,391 - -0.5
2,754,918 - -1.0
2,754,918 - +0.5

Or see this region's nucleotide sequence