Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11845

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11840 and BPHYT_RS11845 are separated by 88 nucleotidesBPHYT_RS11845 and BPHYT_RS11850 are separated by 205 nucleotides BPHYT_RS11840: BPHYT_RS11840 - LysR family transcriptional regulator, at 2,684,693 to 2,685,574 _RS11840 BPHYT_RS11845: BPHYT_RS11845 - 3-ketoacyl-ACP reductase, at 2,685,663 to 2,686,430 _RS11845 BPHYT_RS11850: BPHYT_RS11850 - transcriptional regulator, at 2,686,636 to 2,687,550 _RS11850 Position (kb) 2685 2686 2687Strain fitness (log2 ratio) -1 0 1at 2684.924 kb on + strand, within BPHYT_RS11840at 2685.118 kb on + strand, within BPHYT_RS11840at 2685.226 kb on - strand, within BPHYT_RS11840at 2685.733 kb on + strandat 2686.531 kb on - strandat 2687.405 kb on - strand, within BPHYT_RS11850

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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2,684,924 + BPHYT_RS11840 0.26 +1.1
2,685,118 + BPHYT_RS11840 0.48 -1.3
2,685,226 - BPHYT_RS11840 0.60 +0.4
2,685,733 + -1.3
2,686,531 - -0.2
2,687,405 - BPHYT_RS11850 0.84 +0.1

Or see this region's nucleotide sequence