Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS10640 and BPHYT_RS10645 are separated by 39 nucleotides BPHYT_RS10645 and BPHYT_RS10650 are separated by 197 nucleotides BPHYT_RS10650 and BPHYT_RS10655 are separated by 169 nucleotides
BPHYT_RS10640: BPHYT_RS10640 - carbonic anhydrase, at 2,424,748 to 2,425,407
_RS10640
BPHYT_RS10645: BPHYT_RS10645 - cyanate hydratase, at 2,425,447 to 2,425,917
_RS10645
BPHYT_RS10650: BPHYT_RS10650 - membrane protein, at 2,426,115 to 2,426,846
_RS10650
BPHYT_RS10655: BPHYT_RS10655 - LysR family transcriptional regulator, at 2,427,016 to 2,427,900
_RS10655
Position (kb) 2426
2427 Strain fitness (log2 ratio) -1
0
1 at 2425.120 kb on + strand, within BPHYT_RS10640 at 2425.429 kb on - strand at 2425.756 kb on + strand, within BPHYT_RS10645 at 2426.055 kb on + strand at 2426.166 kb on - strand at 2426.527 kb on + strand, within BPHYT_RS10650 at 2426.928 kb on + strand at 2426.929 kb on - strand at 2426.934 kb on - strand at 2427.001 kb on + strand at 2427.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 2,425,120 + BPHYT_RS10640 0.56 +0.3 2,425,429 - +1.4 2,425,756 + BPHYT_RS10645 0.66 +1.6 2,426,055 + +0.5 2,426,166 - -0.3 2,426,527 + BPHYT_RS10650 0.56 -0.9 2,426,928 + +0.6 2,426,929 - -0.5 2,426,934 - +0.8 2,427,001 + -0.2 2,427,001 + -0.5
Or see this region's nucleotide sequence