Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09880

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09875 and BPHYT_RS09880 are separated by 153 nucleotidesBPHYT_RS09880 and BPHYT_RS09885 are separated by 0 nucleotides BPHYT_RS09875: BPHYT_RS09875 - aldehyde dehydrogenase, at 2,246,484 to 2,247,929 _RS09875 BPHYT_RS09880: BPHYT_RS09880 - MFS transporter, at 2,248,083 to 2,249,405 _RS09880 BPHYT_RS09885: BPHYT_RS09885 - isomerase, at 2,249,406 to 2,250,623 _RS09885 Position (kb) 2248 2249 2250Strain fitness (log2 ratio) -1 0 1at 2247.128 kb on - strand, within BPHYT_RS09875at 2247.735 kb on + strand, within BPHYT_RS09875at 2247.924 kb on + strandat 2248.028 kb on + strandat 2248.170 kb on - strandat 2248.326 kb on + strand, within BPHYT_RS09880at 2249.794 kb on - strand, within BPHYT_RS09885at 2249.986 kb on + strand, within BPHYT_RS09885at 2250.309 kb on + strand, within BPHYT_RS09885

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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2,247,128 - BPHYT_RS09875 0.45 +0.6
2,247,735 + BPHYT_RS09875 0.87 -0.8
2,247,924 + +0.4
2,248,028 + -0.3
2,248,170 - +0.8
2,248,326 + BPHYT_RS09880 0.18 +0.8
2,249,794 - BPHYT_RS09885 0.32 -1.2
2,249,986 + BPHYT_RS09885 0.48 +0.5
2,250,309 + BPHYT_RS09885 0.74 +0.7

Or see this region's nucleotide sequence