Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08685 and BPHYT_RS08690 are separated by 90 nucleotides BPHYT_RS08690 and BPHYT_RS08695 are separated by 157 nucleotides BPHYT_RS08695 and BPHYT_RS08700 are separated by 88 nucleotides BPHYT_RS08700 and BPHYT_RS08705 are separated by 143 nucleotides BPHYT_RS08705 and BPHYT_RS08710 are separated by 430 nucleotides
BPHYT_RS08685: BPHYT_RS08685 - hypothetical protein, at 1,974,732 to 1,974,956
_RS08685
BPHYT_RS08690: BPHYT_RS08690 - hypothetical protein, at 1,975,047 to 1,975,292
_RS08690
BPHYT_RS08695: BPHYT_RS08695 - tRNA-His, at 1,975,450 to 1,975,525
_RS08695
BPHYT_RS08700: BPHYT_RS08700 - tRNA-dihydrouridine synthase A, at 1,975,614 to 1,976,615
_RS08700
BPHYT_RS08705: BPHYT_RS08705 - hypothetical protein, at 1,976,759 to 1,977,064
_RS08705
BPHYT_RS08710: BPHYT_RS08710 - hypothetical protein, at 1,977,495 to 1,979,087
_RS08710
Position (kb) 1975
1976
1977 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1974.677 kb on + strand at 1974.822 kb on - strand, within BPHYT_RS08685 at 1974.861 kb on + strand, within BPHYT_RS08685 at 1974.861 kb on + strand, within BPHYT_RS08685 at 1974.862 kb on - strand, within BPHYT_RS08685 at 1974.862 kb on - strand, within BPHYT_RS08685 at 1974.925 kb on + strand, within BPHYT_RS08685 at 1974.926 kb on - strand, within BPHYT_RS08685 at 1975.104 kb on + strand, within BPHYT_RS08690 at 1975.104 kb on + strand, within BPHYT_RS08690 at 1975.104 kb on + strand, within BPHYT_RS08690 at 1975.104 kb on + strand, within BPHYT_RS08690 at 1975.105 kb on - strand, within BPHYT_RS08690 at 1975.105 kb on - strand, within BPHYT_RS08690 at 1975.435 kb on - strand at 1975.698 kb on - strand at 1975.744 kb on + strand, within BPHYT_RS08700 at 1975.780 kb on + strand, within BPHYT_RS08700 at 1975.781 kb on - strand, within BPHYT_RS08700 at 1975.781 kb on - strand, within BPHYT_RS08700 at 1975.867 kb on + strand, within BPHYT_RS08700 at 1975.867 kb on + strand, within BPHYT_RS08700 at 1976.036 kb on - strand, within BPHYT_RS08700 at 1976.170 kb on + strand, within BPHYT_RS08700 at 1976.171 kb on - strand, within BPHYT_RS08700 at 1976.347 kb on + strand, within BPHYT_RS08700 at 1976.412 kb on + strand, within BPHYT_RS08700 at 1976.412 kb on + strand, within BPHYT_RS08700 at 1976.532 kb on + strand at 1976.685 kb on - strand at 1976.953 kb on + strand, within BPHYT_RS08705 at 1976.953 kb on + strand, within BPHYT_RS08705 at 1976.954 kb on - strand, within BPHYT_RS08705 at 1976.980 kb on + strand, within BPHYT_RS08705 at 1977.011 kb on - strand, within BPHYT_RS08705 at 1977.047 kb on - strand at 1977.059 kb on - strand at 1977.064 kb on + strand at 1977.065 kb on - strand at 1977.070 kb on + strand at 1977.314 kb on + strand at 1977.314 kb on + strand at 1977.314 kb on + strand at 1977.373 kb on - strand at 1977.392 kb on - strand at 1977.483 kb on - strand at 1977.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,974,677 + -0.6 1,974,822 - BPHYT_RS08685 0.40 +2.4 1,974,861 + BPHYT_RS08685 0.57 +2.3 1,974,861 + BPHYT_RS08685 0.57 +0.4 1,974,862 - BPHYT_RS08685 0.58 +0.1 1,974,862 - BPHYT_RS08685 0.58 -0.5 1,974,925 + BPHYT_RS08685 0.86 -1.3 1,974,926 - BPHYT_RS08685 0.86 -1.6 1,975,104 + BPHYT_RS08690 0.23 +1.1 1,975,104 + BPHYT_RS08690 0.23 -0.1 1,975,104 + BPHYT_RS08690 0.23 +0.7 1,975,104 + BPHYT_RS08690 0.23 +0.9 1,975,105 - BPHYT_RS08690 0.24 -0.7 1,975,105 - BPHYT_RS08690 0.24 -0.8 1,975,435 - -1.0 1,975,698 - +2.5 1,975,744 + BPHYT_RS08700 0.13 +1.3 1,975,780 + BPHYT_RS08700 0.17 -0.3 1,975,781 - BPHYT_RS08700 0.17 +0.8 1,975,781 - BPHYT_RS08700 0.17 +0.2 1,975,867 + BPHYT_RS08700 0.25 +1.3 1,975,867 + BPHYT_RS08700 0.25 +0.7 1,976,036 - BPHYT_RS08700 0.42 -1.9 1,976,170 + BPHYT_RS08700 0.55 -0.2 1,976,171 - BPHYT_RS08700 0.56 +1.5 1,976,347 + BPHYT_RS08700 0.73 +0.7 1,976,412 + BPHYT_RS08700 0.80 +0.3 1,976,412 + BPHYT_RS08700 0.80 +2.1 1,976,532 + -0.2 1,976,685 - -0.4 1,976,953 + BPHYT_RS08705 0.63 -0.3 1,976,953 + BPHYT_RS08705 0.63 +2.0 1,976,954 - BPHYT_RS08705 0.64 -0.3 1,976,980 + BPHYT_RS08705 0.72 +1.4 1,977,011 - BPHYT_RS08705 0.82 +1.4 1,977,047 - -1.0 1,977,059 - -0.3 1,977,064 + +0.8 1,977,065 - -0.5 1,977,070 + +0.7 1,977,314 + +1.4 1,977,314 + -0.1 1,977,314 + -1.3 1,977,373 - -1.3 1,977,392 - -0.7 1,977,483 - -1.3 1,977,483 - -0.9
Or see this region's nucleotide sequence