Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08385

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08380 and BPHYT_RS08385 are separated by 137 nucleotidesBPHYT_RS08385 and BPHYT_RS08390 overlap by 4 nucleotides BPHYT_RS08380: BPHYT_RS08380 - multidrug MFS transporter, at 1,919,755 to 1,921,080 _RS08380 BPHYT_RS08385: BPHYT_RS08385 - secretion protein, at 1,921,218 to 1,922,756 _RS08385 BPHYT_RS08390: BPHYT_RS08390 - DSBA oxidoreductase, at 1,922,753 to 1,923,829 _RS08390 Position (kb) 1921 1922 1923Strain fitness (log2 ratio) -1 0 1at 1920.419 kb on - strand, within BPHYT_RS08380at 1921.093 kb on - strandat 1921.184 kb on - strandat 1922.171 kb on - strand, within BPHYT_RS08385at 1923.602 kb on + strand, within BPHYT_RS08390at 1923.743 kb on + strandat 1923.745 kb on + strandat 1923.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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1,920,419 - BPHYT_RS08380 0.50 +0.1
1,921,093 - +0.5
1,921,184 - -1.0
1,922,171 - BPHYT_RS08385 0.62 -1.1
1,923,602 + BPHYT_RS08390 0.79 -0.9
1,923,743 + +0.3
1,923,745 + +1.0
1,923,745 + +0.3

Or see this region's nucleotide sequence