Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05945

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05935 and BPHYT_RS05940 are separated by 273 nucleotidesBPHYT_RS05940 and BPHYT_RS05945 are separated by 103 nucleotidesBPHYT_RS05945 and BPHYT_RS05950 are separated by 165 nucleotides BPHYT_RS05935: BPHYT_RS05935 - DNA topoisomerase IV subunit A, at 1,348,030 to 1,350,354 _RS05935 BPHYT_RS05940: BPHYT_RS05940 - membrane protein, at 1,350,628 to 1,351,086 _RS05940 BPHYT_RS05945: BPHYT_RS05945 - chromate transporter, at 1,351,190 to 1,352,398 _RS05945 BPHYT_RS05950: BPHYT_RS05950 - dGTP triphosphohydrolase, at 1,352,564 to 1,354,918 _RS05950 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -2 -1 0 1 2at 1350.389 kb on + strandat 1350.390 kb on - strandat 1350.395 kb on - strandat 1350.472 kb on + strandat 1350.472 kb on + strandat 1350.543 kb on + strandat 1350.544 kb on - strandat 1350.749 kb on + strand, within BPHYT_RS05940at 1350.750 kb on - strand, within BPHYT_RS05940at 1350.927 kb on + strand, within BPHYT_RS05940at 1351.254 kb on + strandat 1351.254 kb on + strandat 1351.311 kb on + strand, within BPHYT_RS05945at 1351.311 kb on + strand, within BPHYT_RS05945at 1351.878 kb on + strand, within BPHYT_RS05945at 1351.899 kb on + strand, within BPHYT_RS05945at 1351.899 kb on + strand, within BPHYT_RS05945at 1351.900 kb on - strand, within BPHYT_RS05945at 1351.972 kb on + strand, within BPHYT_RS05945at 1351.975 kb on - strand, within BPHYT_RS05945at 1352.064 kb on + strand, within BPHYT_RS05945at 1352.262 kb on + strand, within BPHYT_RS05945at 1352.428 kb on + strandat 1353.288 kb on - strand, within BPHYT_RS05950at 1353.288 kb on - strand, within BPHYT_RS05950at 1353.342 kb on + strand, within BPHYT_RS05950

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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1,350,389 + +0.8
1,350,390 - +1.2
1,350,395 - -0.4
1,350,472 + +0.3
1,350,472 + +1.4
1,350,543 + +0.5
1,350,544 - -1.4
1,350,749 + BPHYT_RS05940 0.26 -0.2
1,350,750 - BPHYT_RS05940 0.27 +0.4
1,350,927 + BPHYT_RS05940 0.65 +0.4
1,351,254 + -0.4
1,351,254 + -1.8
1,351,311 + BPHYT_RS05945 0.10 -0.8
1,351,311 + BPHYT_RS05945 0.10 -0.2
1,351,878 + BPHYT_RS05945 0.57 +1.0
1,351,899 + BPHYT_RS05945 0.59 +1.8
1,351,899 + BPHYT_RS05945 0.59 -1.0
1,351,900 - BPHYT_RS05945 0.59 +1.6
1,351,972 + BPHYT_RS05945 0.65 +0.4
1,351,975 - BPHYT_RS05945 0.65 +1.4
1,352,064 + BPHYT_RS05945 0.72 +2.0
1,352,262 + BPHYT_RS05945 0.89 +0.7
1,352,428 + -0.9
1,353,288 - BPHYT_RS05950 0.31 +0.2
1,353,288 - BPHYT_RS05950 0.31 +0.4
1,353,342 + BPHYT_RS05950 0.33 -0.0

Or see this region's nucleotide sequence