Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05045 and BPHYT_RS05050 are separated by 138 nucleotides BPHYT_RS05050 and BPHYT_RS05055 are separated by 278 nucleotides
BPHYT_RS05045: BPHYT_RS05045 - transcriptional regulator, at 1,162,955 to 1,163,872
_RS05045
BPHYT_RS05050: BPHYT_RS05050 - glutathione S-transferase, at 1,164,011 to 1,164,670
_RS05050
BPHYT_RS05055: BPHYT_RS05055 - flagellar hook protein FliD, at 1,164,949 to 1,166,457
_RS05055
Position (kb) 1164
1165 Strain fitness (log2 ratio) -1
0
1
2 at 1163.055 kb on + strand, within BPHYT_RS05045 at 1163.216 kb on + strand, within BPHYT_RS05045 at 1163.298 kb on + strand, within BPHYT_RS05045 at 1163.299 kb on - strand, within BPHYT_RS05045 at 1163.581 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.676 kb on + strand, within BPHYT_RS05045 at 1163.767 kb on + strand, within BPHYT_RS05045 at 1163.846 kb on + strand at 1163.901 kb on + strand at 1163.902 kb on - strand at 1163.902 kb on - strand at 1163.920 kb on + strand at 1163.921 kb on - strand at 1163.922 kb on + strand at 1164.255 kb on + strand, within BPHYT_RS05050 at 1164.330 kb on + strand, within BPHYT_RS05050 at 1164.360 kb on + strand, within BPHYT_RS05050 at 1164.360 kb on + strand, within BPHYT_RS05050 at 1164.361 kb on - strand at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.634 kb on - strand at 1164.654 kb on + strand at 1164.691 kb on - strand at 1164.782 kb on + strand at 1164.802 kb on - strand at 1164.817 kb on + strand at 1164.853 kb on - strand at 1164.934 kb on + strand at 1164.934 kb on + strand at 1165.303 kb on + strand, within BPHYT_RS05055 at 1165.304 kb on - strand, within BPHYT_RS05055 at 1165.304 kb on - strand, within BPHYT_RS05055 at 1165.304 kb on - strand, within BPHYT_RS05055 at 1165.599 kb on - strand, within BPHYT_RS05055 at 1165.599 kb on - strand, within BPHYT_RS05055
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,163,055 + BPHYT_RS05045 0.11 -0.5 1,163,216 + BPHYT_RS05045 0.28 +1.1 1,163,298 + BPHYT_RS05045 0.37 +0.8 1,163,299 - BPHYT_RS05045 0.37 +0.7 1,163,581 + BPHYT_RS05045 0.68 +0.4 1,163,676 + BPHYT_RS05045 0.79 -0.5 1,163,676 + BPHYT_RS05045 0.79 -0.6 1,163,676 + BPHYT_RS05045 0.79 -0.5 1,163,767 + BPHYT_RS05045 0.88 +1.6 1,163,846 + +0.2 1,163,901 + -1.6 1,163,902 - +0.8 1,163,902 - -0.8 1,163,920 + -0.6 1,163,921 - +0.1 1,163,922 + -0.2 1,164,255 + BPHYT_RS05050 0.37 -0.9 1,164,330 + BPHYT_RS05050 0.48 +1.2 1,164,360 + BPHYT_RS05050 0.53 +1.0 1,164,360 + BPHYT_RS05050 0.53 +1.2 1,164,361 - +2.1 1,164,361 - BPHYT_RS05050 0.53 +1.6 1,164,361 - BPHYT_RS05050 0.53 -0.2 1,164,361 - BPHYT_RS05050 0.53 -0.4 1,164,634 - +0.5 1,164,654 + +0.4 1,164,691 - -0.3 1,164,782 + -0.0 1,164,802 - -0.0 1,164,817 + +0.1 1,164,853 - -0.6 1,164,934 + -0.4 1,164,934 + -0.0 1,165,303 + BPHYT_RS05055 0.23 -0.4 1,165,304 - BPHYT_RS05055 0.24 +0.6 1,165,304 - BPHYT_RS05055 0.24 +0.6 1,165,304 - BPHYT_RS05055 0.24 -0.3 1,165,599 - BPHYT_RS05055 0.43 +0.8 1,165,599 - BPHYT_RS05055 0.43 +0.5
Or see this region's nucleotide sequence