Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04685

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04680 and BPHYT_RS04685 are separated by 2 nucleotidesBPHYT_RS04685 and BPHYT_RS04690 overlap by 20 nucleotides BPHYT_RS04680: BPHYT_RS04680 - LacI family transcriptional regulator, at 1,082,113 to 1,083,192 _RS04680 BPHYT_RS04685: BPHYT_RS04685 - ABC transporter ATP-binding protein, at 1,083,195 to 1,084,682 _RS04685 BPHYT_RS04690: BPHYT_RS04690 - ABC transporter permease, at 1,084,663 to 1,085,676 _RS04690 Position (kb) 1083 1084 1085Strain fitness (log2 ratio) -1 0 1 2at 1082.470 kb on + strand, within BPHYT_RS04680at 1082.471 kb on - strand, within BPHYT_RS04680at 1082.521 kb on + strand, within BPHYT_RS04680at 1082.681 kb on - strand, within BPHYT_RS04680at 1082.762 kb on - strand, within BPHYT_RS04680at 1082.762 kb on - strand, within BPHYT_RS04680at 1082.768 kb on - strand, within BPHYT_RS04680at 1082.768 kb on - strand, within BPHYT_RS04680at 1082.864 kb on - strand, within BPHYT_RS04680at 1083.291 kb on + strandat 1083.292 kb on - strandat 1083.292 kb on - strandat 1083.292 kb on - strandat 1083.495 kb on + strand, within BPHYT_RS04685at 1083.495 kb on + strand, within BPHYT_RS04685at 1083.496 kb on - strand, within BPHYT_RS04685at 1083.496 kb on - strand, within BPHYT_RS04685at 1083.777 kb on + strand, within BPHYT_RS04685at 1083.777 kb on + strand, within BPHYT_RS04685at 1083.778 kb on - strand, within BPHYT_RS04685at 1083.778 kb on - strand, within BPHYT_RS04685at 1084.192 kb on - strand, within BPHYT_RS04685at 1084.419 kb on + strand, within BPHYT_RS04685at 1084.420 kb on - strand, within BPHYT_RS04685at 1084.420 kb on - strand, within BPHYT_RS04685at 1084.497 kb on + strand, within BPHYT_RS04685at 1084.726 kb on + strandat 1084.726 kb on + strandat 1085.200 kb on + strand, within BPHYT_RS04690at 1085.204 kb on - strand, within BPHYT_RS04690at 1085.338 kb on + strand, within BPHYT_RS04690at 1085.377 kb on + strand, within BPHYT_RS04690at 1085.378 kb on - strand, within BPHYT_RS04690at 1085.378 kb on - strand, within BPHYT_RS04690at 1085.419 kb on + strand, within BPHYT_RS04690at 1085.419 kb on + strand, within BPHYT_RS04690at 1085.420 kb on - strand, within BPHYT_RS04690at 1085.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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1,082,470 + BPHYT_RS04680 0.33 +1.0
1,082,471 - BPHYT_RS04680 0.33 -1.4
1,082,521 + BPHYT_RS04680 0.38 +1.2
1,082,681 - BPHYT_RS04680 0.53 +0.5
1,082,762 - BPHYT_RS04680 0.60 +0.2
1,082,762 - BPHYT_RS04680 0.60 -0.1
1,082,768 - BPHYT_RS04680 0.61 +0.7
1,082,768 - BPHYT_RS04680 0.61 +0.4
1,082,864 - BPHYT_RS04680 0.70 +1.3
1,083,291 + -0.3
1,083,292 - +0.8
1,083,292 - -0.3
1,083,292 - -0.6
1,083,495 + BPHYT_RS04685 0.20 +0.3
1,083,495 + BPHYT_RS04685 0.20 +0.7
1,083,496 - BPHYT_RS04685 0.20 +0.4
1,083,496 - BPHYT_RS04685 0.20 -0.4
1,083,777 + BPHYT_RS04685 0.39 +1.3
1,083,777 + BPHYT_RS04685 0.39 +0.5
1,083,778 - BPHYT_RS04685 0.39 -0.1
1,083,778 - BPHYT_RS04685 0.39 -0.6
1,084,192 - BPHYT_RS04685 0.67 +0.7
1,084,419 + BPHYT_RS04685 0.82 -0.3
1,084,420 - BPHYT_RS04685 0.82 -0.4
1,084,420 - BPHYT_RS04685 0.82 -0.5
1,084,497 + BPHYT_RS04685 0.88 -0.6
1,084,726 + -0.6
1,084,726 + +0.5
1,085,200 + BPHYT_RS04690 0.53 -0.8
1,085,204 - BPHYT_RS04690 0.53 +2.2
1,085,338 + BPHYT_RS04690 0.67 +1.2
1,085,377 + BPHYT_RS04690 0.70 +1.5
1,085,378 - BPHYT_RS04690 0.71 +0.1
1,085,378 - BPHYT_RS04690 0.71 +1.0
1,085,419 + BPHYT_RS04690 0.75 +0.1
1,085,419 + BPHYT_RS04690 0.75 +1.5
1,085,420 - BPHYT_RS04690 0.75 -0.4
1,085,657 + -0.1

Or see this region's nucleotide sequence