Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04100 and BPHYT_RS04105 overlap by 4 nucleotides BPHYT_RS04105 and BPHYT_RS04110 are separated by 24 nucleotides BPHYT_RS04110 and BPHYT_RS04115 are separated by 794 nucleotides
BPHYT_RS04100: BPHYT_RS04100 - AraC family transcriptional regulator, at 935,470 to 936,000
_RS04100
BPHYT_RS04105: BPHYT_RS04105 - glyoxalase, at 935,997 to 936,413
_RS04105
BPHYT_RS04110: BPHYT_RS04110 - beta-glucosidase, at 936,438 to 938,126
_RS04110
BPHYT_RS04115: BPHYT_RS04115 - glycosyhydrolase, at 938,921 to 940,375
_RS04115
Position (kb) 936
937
938
939 Strain fitness (log2 ratio) -1
0
1
2
3 at 935.724 kb on + strand, within BPHYT_RS04100 at 936.008 kb on + strand at 936.027 kb on + strand at 936.028 kb on - strand at 936.028 kb on - strand at 936.060 kb on + strand, within BPHYT_RS04105 at 936.279 kb on + strand, within BPHYT_RS04105 at 936.543 kb on + strand at 936.548 kb on - strand at 936.637 kb on + strand, within BPHYT_RS04110 at 936.702 kb on + strand, within BPHYT_RS04110 at 936.705 kb on + strand, within BPHYT_RS04110 at 936.706 kb on - strand, within BPHYT_RS04110 at 936.706 kb on - strand, within BPHYT_RS04110 at 936.776 kb on + strand, within BPHYT_RS04110 at 936.778 kb on + strand, within BPHYT_RS04110 at 936.778 kb on + strand, within BPHYT_RS04110 at 936.809 kb on - strand, within BPHYT_RS04110 at 937.077 kb on - strand, within BPHYT_RS04110 at 937.077 kb on - strand, within BPHYT_RS04110 at 937.078 kb on + strand, within BPHYT_RS04110 at 937.079 kb on - strand, within BPHYT_RS04110 at 937.079 kb on - strand, within BPHYT_RS04110 at 937.086 kb on + strand, within BPHYT_RS04110 at 937.215 kb on - strand, within BPHYT_RS04110 at 937.237 kb on - strand, within BPHYT_RS04110 at 937.237 kb on - strand at 937.249 kb on + strand, within BPHYT_RS04110 at 937.258 kb on + strand, within BPHYT_RS04110 at 937.259 kb on - strand, within BPHYT_RS04110 at 937.259 kb on - strand, within BPHYT_RS04110 at 937.346 kb on - strand, within BPHYT_RS04110 at 937.430 kb on + strand, within BPHYT_RS04110 at 937.430 kb on + strand, within BPHYT_RS04110 at 937.431 kb on - strand, within BPHYT_RS04110 at 937.467 kb on + strand, within BPHYT_RS04110 at 937.468 kb on - strand, within BPHYT_RS04110 at 937.468 kb on - strand, within BPHYT_RS04110 at 937.514 kb on - strand, within BPHYT_RS04110 at 937.534 kb on - strand, within BPHYT_RS04110 at 937.534 kb on - strand, within BPHYT_RS04110 at 937.752 kb on + strand, within BPHYT_RS04110 at 937.794 kb on + strand, within BPHYT_RS04110 at 937.894 kb on + strand, within BPHYT_RS04110 at 938.251 kb on + strand at 938.313 kb on + strand at 938.325 kb on - strand at 938.398 kb on + strand at 938.416 kb on + strand at 938.416 kb on + strand at 938.573 kb on - strand at 938.745 kb on - strand at 938.763 kb on - strand at 938.823 kb on - strand at 938.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 935,724 + BPHYT_RS04100 0.48 +1.4 936,008 + -0.4 936,027 + -0.5 936,028 - -1.0 936,028 - -0.1 936,060 + BPHYT_RS04105 0.15 +0.2 936,279 + BPHYT_RS04105 0.68 -0.2 936,543 + +0.6 936,548 - +0.8 936,637 + BPHYT_RS04110 0.12 -0.3 936,702 + BPHYT_RS04110 0.16 +1.3 936,705 + BPHYT_RS04110 0.16 +0.4 936,706 - BPHYT_RS04110 0.16 +1.0 936,706 - BPHYT_RS04110 0.16 +0.0 936,776 + BPHYT_RS04110 0.20 +2.0 936,778 + BPHYT_RS04110 0.20 +0.6 936,778 + BPHYT_RS04110 0.20 -0.0 936,809 - BPHYT_RS04110 0.22 -1.0 937,077 - BPHYT_RS04110 0.38 +1.8 937,077 - BPHYT_RS04110 0.38 +0.1 937,078 + BPHYT_RS04110 0.38 -0.0 937,079 - BPHYT_RS04110 0.38 +1.1 937,079 - BPHYT_RS04110 0.38 +3.1 937,086 + BPHYT_RS04110 0.38 +1.8 937,215 - BPHYT_RS04110 0.46 +0.9 937,237 - BPHYT_RS04110 0.47 -0.5 937,237 - -1.2 937,249 + BPHYT_RS04110 0.48 +0.3 937,258 + BPHYT_RS04110 0.49 +0.4 937,259 - BPHYT_RS04110 0.49 +0.9 937,259 - BPHYT_RS04110 0.49 -0.2 937,346 - BPHYT_RS04110 0.54 -0.2 937,430 + BPHYT_RS04110 0.59 +1.0 937,430 + BPHYT_RS04110 0.59 -0.2 937,431 - BPHYT_RS04110 0.59 +0.1 937,467 + BPHYT_RS04110 0.61 -0.3 937,468 - BPHYT_RS04110 0.61 +0.6 937,468 - BPHYT_RS04110 0.61 -0.1 937,514 - BPHYT_RS04110 0.64 +0.5 937,534 - BPHYT_RS04110 0.65 +0.4 937,534 - BPHYT_RS04110 0.65 +0.8 937,752 + BPHYT_RS04110 0.78 +0.4 937,794 + BPHYT_RS04110 0.80 +0.8 937,894 + BPHYT_RS04110 0.86 -0.1 938,251 + -0.0 938,313 + +0.9 938,325 - +0.8 938,398 + +0.4 938,416 + +0.4 938,416 + +0.8 938,573 - +0.4 938,745 - +0.7 938,763 - -1.5 938,823 - +1.4 938,929 - -0.3
Or see this region's nucleotide sequence