Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04110

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04100 and BPHYT_RS04105 overlap by 4 nucleotidesBPHYT_RS04105 and BPHYT_RS04110 are separated by 24 nucleotidesBPHYT_RS04110 and BPHYT_RS04115 are separated by 794 nucleotides BPHYT_RS04100: BPHYT_RS04100 - AraC family transcriptional regulator, at 935,470 to 936,000 _RS04100 BPHYT_RS04105: BPHYT_RS04105 - glyoxalase, at 935,997 to 936,413 _RS04105 BPHYT_RS04110: BPHYT_RS04110 - beta-glucosidase, at 936,438 to 938,126 _RS04110 BPHYT_RS04115: BPHYT_RS04115 - glycosyhydrolase, at 938,921 to 940,375 _RS04115 Position (kb) 936 937 938 939Strain fitness (log2 ratio) -1 0 1 2 3at 935.724 kb on + strand, within BPHYT_RS04100at 936.008 kb on + strandat 936.027 kb on + strandat 936.028 kb on - strandat 936.028 kb on - strandat 936.060 kb on + strand, within BPHYT_RS04105at 936.279 kb on + strand, within BPHYT_RS04105at 936.543 kb on + strandat 936.548 kb on - strandat 936.637 kb on + strand, within BPHYT_RS04110at 936.702 kb on + strand, within BPHYT_RS04110at 936.705 kb on + strand, within BPHYT_RS04110at 936.706 kb on - strand, within BPHYT_RS04110at 936.706 kb on - strand, within BPHYT_RS04110at 936.776 kb on + strand, within BPHYT_RS04110at 936.778 kb on + strand, within BPHYT_RS04110at 936.778 kb on + strand, within BPHYT_RS04110at 936.809 kb on - strand, within BPHYT_RS04110at 937.077 kb on - strand, within BPHYT_RS04110at 937.077 kb on - strand, within BPHYT_RS04110at 937.078 kb on + strand, within BPHYT_RS04110at 937.079 kb on - strand, within BPHYT_RS04110at 937.079 kb on - strand, within BPHYT_RS04110at 937.086 kb on + strand, within BPHYT_RS04110at 937.215 kb on - strand, within BPHYT_RS04110at 937.237 kb on - strand, within BPHYT_RS04110at 937.237 kb on - strandat 937.249 kb on + strand, within BPHYT_RS04110at 937.258 kb on + strand, within BPHYT_RS04110at 937.259 kb on - strand, within BPHYT_RS04110at 937.259 kb on - strand, within BPHYT_RS04110at 937.346 kb on - strand, within BPHYT_RS04110at 937.430 kb on + strand, within BPHYT_RS04110at 937.430 kb on + strand, within BPHYT_RS04110at 937.431 kb on - strand, within BPHYT_RS04110at 937.467 kb on + strand, within BPHYT_RS04110at 937.468 kb on - strand, within BPHYT_RS04110at 937.468 kb on - strand, within BPHYT_RS04110at 937.514 kb on - strand, within BPHYT_RS04110at 937.534 kb on - strand, within BPHYT_RS04110at 937.534 kb on - strand, within BPHYT_RS04110at 937.752 kb on + strand, within BPHYT_RS04110at 937.794 kb on + strand, within BPHYT_RS04110at 937.894 kb on + strand, within BPHYT_RS04110at 938.251 kb on + strandat 938.313 kb on + strandat 938.325 kb on - strandat 938.398 kb on + strandat 938.416 kb on + strandat 938.416 kb on + strandat 938.573 kb on - strandat 938.745 kb on - strandat 938.763 kb on - strandat 938.823 kb on - strandat 938.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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935,724 + BPHYT_RS04100 0.48 +1.4
936,008 + -0.4
936,027 + -0.5
936,028 - -1.0
936,028 - -0.1
936,060 + BPHYT_RS04105 0.15 +0.2
936,279 + BPHYT_RS04105 0.68 -0.2
936,543 + +0.6
936,548 - +0.8
936,637 + BPHYT_RS04110 0.12 -0.3
936,702 + BPHYT_RS04110 0.16 +1.3
936,705 + BPHYT_RS04110 0.16 +0.4
936,706 - BPHYT_RS04110 0.16 +1.0
936,706 - BPHYT_RS04110 0.16 +0.0
936,776 + BPHYT_RS04110 0.20 +2.0
936,778 + BPHYT_RS04110 0.20 +0.6
936,778 + BPHYT_RS04110 0.20 -0.0
936,809 - BPHYT_RS04110 0.22 -1.0
937,077 - BPHYT_RS04110 0.38 +1.8
937,077 - BPHYT_RS04110 0.38 +0.1
937,078 + BPHYT_RS04110 0.38 -0.0
937,079 - BPHYT_RS04110 0.38 +1.1
937,079 - BPHYT_RS04110 0.38 +3.1
937,086 + BPHYT_RS04110 0.38 +1.8
937,215 - BPHYT_RS04110 0.46 +0.9
937,237 - BPHYT_RS04110 0.47 -0.5
937,237 - -1.2
937,249 + BPHYT_RS04110 0.48 +0.3
937,258 + BPHYT_RS04110 0.49 +0.4
937,259 - BPHYT_RS04110 0.49 +0.9
937,259 - BPHYT_RS04110 0.49 -0.2
937,346 - BPHYT_RS04110 0.54 -0.2
937,430 + BPHYT_RS04110 0.59 +1.0
937,430 + BPHYT_RS04110 0.59 -0.2
937,431 - BPHYT_RS04110 0.59 +0.1
937,467 + BPHYT_RS04110 0.61 -0.3
937,468 - BPHYT_RS04110 0.61 +0.6
937,468 - BPHYT_RS04110 0.61 -0.1
937,514 - BPHYT_RS04110 0.64 +0.5
937,534 - BPHYT_RS04110 0.65 +0.4
937,534 - BPHYT_RS04110 0.65 +0.8
937,752 + BPHYT_RS04110 0.78 +0.4
937,794 + BPHYT_RS04110 0.80 +0.8
937,894 + BPHYT_RS04110 0.86 -0.1
938,251 + -0.0
938,313 + +0.9
938,325 - +0.8
938,398 + +0.4
938,416 + +0.4
938,416 + +0.8
938,573 - +0.4
938,745 - +0.7
938,763 - -1.5
938,823 - +1.4
938,929 - -0.3

Or see this region's nucleotide sequence