Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02690

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02685 and BPHYT_RS02690 are separated by 6 nucleotidesBPHYT_RS02690 and BPHYT_RS02695 are separated by 4 nucleotidesBPHYT_RS02695 and BPHYT_RS02700 are separated by 67 nucleotides BPHYT_RS02685: BPHYT_RS02685 - cytochrome C oxidase subunit I, at 603,128 to 604,237 _RS02685 BPHYT_RS02690: BPHYT_RS02690 - protoheme IX farnesyltransferase, at 604,244 to 605,149 _RS02690 BPHYT_RS02695: BPHYT_RS02695 - photosynthetic protein synthase I, at 605,154 to 605,771 _RS02695 BPHYT_RS02700: BPHYT_RS02700 - hypothetical protein, at 605,839 to 606,129 _RS02700 Position (kb) 604 605 606Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 603.438 kb on - strand, within BPHYT_RS02685at 603.499 kb on + strand, within BPHYT_RS02685at 603.499 kb on + strand, within BPHYT_RS02685at 603.499 kb on + strand, within BPHYT_RS02685at 603.522 kb on + strand, within BPHYT_RS02685at 603.522 kb on + strand, within BPHYT_RS02685at 603.523 kb on - strand, within BPHYT_RS02685at 603.523 kb on - strand, within BPHYT_RS02685at 603.614 kb on - strand, within BPHYT_RS02685at 603.648 kb on + strand, within BPHYT_RS02685at 603.794 kb on + strand, within BPHYT_RS02685at 603.980 kb on + strand, within BPHYT_RS02685at 604.126 kb on + strand, within BPHYT_RS02685at 604.163 kb on - strandat 604.184 kb on + strandat 604.186 kb on + strandat 604.186 kb on + strandat 604.187 kb on - strandat 604.293 kb on - strandat 604.293 kb on - strandat 604.293 kb on - strandat 604.580 kb on + strand, within BPHYT_RS02690at 604.580 kb on + strand, within BPHYT_RS02690at 604.581 kb on - strand, within BPHYT_RS02690at 604.622 kb on - strand, within BPHYT_RS02690at 604.646 kb on + strand, within BPHYT_RS02690at 604.646 kb on + strand, within BPHYT_RS02690at 604.646 kb on + strand, within BPHYT_RS02690at 604.647 kb on - strand, within BPHYT_RS02690at 604.647 kb on - strand, within BPHYT_RS02690at 604.648 kb on + strand, within BPHYT_RS02690at 604.839 kb on - strand, within BPHYT_RS02690at 604.886 kb on + strand, within BPHYT_RS02690at 604.886 kb on + strand, within BPHYT_RS02690at 604.886 kb on + strand, within BPHYT_RS02690at 604.900 kb on + strand, within BPHYT_RS02690at 604.910 kb on + strand, within BPHYT_RS02690at 604.910 kb on + strand, within BPHYT_RS02690at 604.911 kb on - strand, within BPHYT_RS02690at 604.973 kb on + strand, within BPHYT_RS02690at 604.973 kb on + strand, within BPHYT_RS02690at 604.974 kb on - strand, within BPHYT_RS02690at 605.150 kb on + strandat 605.151 kb on - strandat 605.347 kb on - strand, within BPHYT_RS02695at 605.359 kb on + strand, within BPHYT_RS02695at 605.360 kb on - strand, within BPHYT_RS02695at 605.526 kb on + strand, within BPHYT_RS02695at 605.527 kb on - strand, within BPHYT_RS02695at 605.527 kb on - strand, within BPHYT_RS02695at 605.650 kb on - strand, within BPHYT_RS02695at 605.650 kb on - strand, within BPHYT_RS02695at 605.676 kb on + strand, within BPHYT_RS02695at 605.676 kb on + strand, within BPHYT_RS02695at 605.677 kb on - strand, within BPHYT_RS02695at 605.677 kb on - strand, within BPHYT_RS02695at 606.107 kb on + strandat 606.107 kb on + strandat 606.108 kb on - strandat 606.111 kb on + strandat 606.112 kb on - strandat 606.125 kb on + strandat 606.125 kb on + strandat 606.126 kb on - strandat 606.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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603,438 - BPHYT_RS02685 0.28 -1.8
603,499 + BPHYT_RS02685 0.33 -2.3
603,499 + BPHYT_RS02685 0.33 -0.9
603,499 + BPHYT_RS02685 0.33 -0.9
603,522 + BPHYT_RS02685 0.35 -1.5
603,522 + BPHYT_RS02685 0.35 -2.3
603,523 - BPHYT_RS02685 0.36 -0.3
603,523 - BPHYT_RS02685 0.36 -0.9
603,614 - BPHYT_RS02685 0.44 -1.1
603,648 + BPHYT_RS02685 0.47 -2.8
603,794 + BPHYT_RS02685 0.60 -1.3
603,980 + BPHYT_RS02685 0.77 -2.4
604,126 + BPHYT_RS02685 0.90 +0.7
604,163 - -1.2
604,184 + -0.4
604,186 + -1.5
604,186 + +1.0
604,187 - -2.1
604,293 - -4.6
604,293 - -2.5
604,293 - -0.3
604,580 + BPHYT_RS02690 0.37 -5.2
604,580 + BPHYT_RS02690 0.37 -3.1
604,581 - BPHYT_RS02690 0.37 -1.3
604,622 - BPHYT_RS02690 0.42 -1.8
604,646 + BPHYT_RS02690 0.44 -2.1
604,646 + BPHYT_RS02690 0.44 -2.6
604,646 + BPHYT_RS02690 0.44 -3.5
604,647 - BPHYT_RS02690 0.44 -3.9
604,647 - BPHYT_RS02690 0.44 -3.5
604,648 + BPHYT_RS02690 0.45 -2.2
604,839 - BPHYT_RS02690 0.66 -1.8
604,886 + BPHYT_RS02690 0.71 -2.6
604,886 + BPHYT_RS02690 0.71 -0.3
604,886 + BPHYT_RS02690 0.71 -3.3
604,900 + BPHYT_RS02690 0.72 -3.9
604,910 + BPHYT_RS02690 0.74 -3.3
604,910 + BPHYT_RS02690 0.74 -3.4
604,911 - BPHYT_RS02690 0.74 -1.5
604,973 + BPHYT_RS02690 0.80 -2.3
604,973 + BPHYT_RS02690 0.80 -3.8
604,974 - BPHYT_RS02690 0.81 +0.7
605,150 + -1.3
605,151 - +0.5
605,347 - BPHYT_RS02695 0.31 -1.8
605,359 + BPHYT_RS02695 0.33 -0.6
605,360 - BPHYT_RS02695 0.33 -2.1
605,526 + BPHYT_RS02695 0.60 -2.4
605,527 - BPHYT_RS02695 0.60 -0.7
605,527 - BPHYT_RS02695 0.60 -1.3
605,650 - BPHYT_RS02695 0.80 -3.4
605,650 - BPHYT_RS02695 0.80 -2.1
605,676 + BPHYT_RS02695 0.84 -1.8
605,676 + BPHYT_RS02695 0.84 -2.3
605,677 - BPHYT_RS02695 0.85 -0.8
605,677 - BPHYT_RS02695 0.85 +0.1
606,107 + -1.0
606,107 + -0.0
606,108 - +0.3
606,111 + +1.5
606,112 - -1.3
606,125 + +1.5
606,125 + +1.5
606,126 - +0.3
606,126 - +0.3

Or see this region's nucleotide sequence