Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01040 and BPHYT_RS01045 are separated by 192 nucleotides BPHYT_RS01045 and BPHYT_RS01050 are separated by 446 nucleotides BPHYT_RS01050 and BPHYT_RS01055 are separated by 86 nucleotides
BPHYT_RS01040: BPHYT_RS01040 - Fis family transcriptional regulator, at 238,386 to 238,841
_RS01040
BPHYT_RS01045: BPHYT_RS01045 - hypothetical protein, at 239,034 to 239,327
_RS01045
BPHYT_RS01050: BPHYT_RS01050 - short-chain dehydrogenase, at 239,774 to 240,649
_RS01050
BPHYT_RS01055: BPHYT_RS01055 - LysR family transcriptional regulator, at 240,736 to 241,665
_RS01055
Position (kb) 239
240
241 Strain fitness (log2 ratio) -1
0
1
2 at 238.844 kb on + strand at 238.845 kb on - strand at 238.845 kb on - strand at 238.845 kb on - strand at 238.849 kb on - strand at 238.849 kb on - strand at 238.895 kb on + strand at 238.899 kb on + strand at 238.900 kb on - strand at 238.904 kb on + strand at 238.905 kb on - strand at 238.905 kb on - strand at 238.912 kb on - strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.995 kb on + strand at 238.996 kb on - strand at 239.212 kb on + strand, within BPHYT_RS01045 at 239.212 kb on + strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.296 kb on + strand, within BPHYT_RS01045 at 239.302 kb on + strand at 239.302 kb on + strand at 239.302 kb on + strand at 239.303 kb on - strand at 239.303 kb on - strand at 239.325 kb on + strand at 239.339 kb on + strand at 239.339 kb on + strand at 239.340 kb on - strand at 239.340 kb on - strand at 239.424 kb on - strand at 239.434 kb on + strand at 239.434 kb on + strand at 239.762 kb on + strand at 239.785 kb on + strand at 239.785 kb on + strand at 239.786 kb on - strand at 239.786 kb on - strand at 239.876 kb on - strand, within BPHYT_RS01050 at 239.961 kb on + strand, within BPHYT_RS01050 at 239.962 kb on - strand, within BPHYT_RS01050 at 240.001 kb on - strand, within BPHYT_RS01050 at 240.133 kb on - strand, within BPHYT_RS01050 at 240.447 kb on - strand, within BPHYT_RS01050 at 240.451 kb on + strand, within BPHYT_RS01050 at 240.451 kb on + strand, within BPHYT_RS01050 at 240.452 kb on - strand, within BPHYT_RS01050 at 240.581 kb on + strand at 240.581 kb on + strand at 240.581 kb on + strand at 240.706 kb on - strand at 240.706 kb on - strand at 240.750 kb on - strand at 240.768 kb on + strand at 241.096 kb on + strand, within BPHYT_RS01055 at 241.182 kb on + strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.244 kb on - strand, within BPHYT_RS01055 at 241.557 kb on + strand, within BPHYT_RS01055
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 238,844 + +0.8 238,845 - -0.7 238,845 - +0.4 238,845 - -0.4 238,849 - -0.0 238,849 - -0.3 238,895 + +1.2 238,899 + +0.5 238,900 - +0.3 238,904 + +0.6 238,905 - +0.2 238,905 - +0.0 238,912 - -0.4 238,980 + +0.3 238,980 + -1.5 238,995 + -0.5 238,996 - -0.7 239,212 + BPHYT_RS01045 0.61 -0.4 239,212 + BPHYT_RS01045 0.61 -0.2 239,213 - BPHYT_RS01045 0.61 +0.9 239,213 - BPHYT_RS01045 0.61 +0.7 239,213 - BPHYT_RS01045 0.61 +0.6 239,213 - BPHYT_RS01045 0.61 +0.4 239,296 + BPHYT_RS01045 0.89 -0.4 239,302 + -0.4 239,302 + -1.4 239,302 + +0.4 239,303 - +0.2 239,303 - +0.9 239,325 + -0.8 239,339 + +1.1 239,339 + -0.1 239,340 - +0.8 239,340 - -1.4 239,424 - -0.2 239,434 + +0.9 239,434 + -0.4 239,762 + -0.2 239,785 + -1.5 239,785 + -1.1 239,786 - -0.0 239,786 - +0.1 239,876 - BPHYT_RS01050 0.12 -0.6 239,961 + BPHYT_RS01050 0.21 -1.5 239,962 - BPHYT_RS01050 0.21 -0.4 240,001 - BPHYT_RS01050 0.26 +0.0 240,133 - BPHYT_RS01050 0.41 +1.2 240,447 - BPHYT_RS01050 0.77 +2.1 240,451 + BPHYT_RS01050 0.77 -0.9 240,451 + BPHYT_RS01050 0.77 +0.9 240,452 - BPHYT_RS01050 0.77 +0.6 240,581 + +0.6 240,581 + -1.0 240,581 + +2.0 240,706 - +0.1 240,706 - -0.2 240,750 - +0.5 240,768 + -0.6 241,096 + BPHYT_RS01055 0.39 +1.6 241,182 + BPHYT_RS01055 0.48 +0.1 241,183 - BPHYT_RS01055 0.48 -1.2 241,183 - BPHYT_RS01055 0.48 -1.2 241,183 - BPHYT_RS01055 0.48 +0.4 241,244 - BPHYT_RS01055 0.55 +1.5 241,557 + BPHYT_RS01055 0.88 -0.2
Or see this region's nucleotide sequence