Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00645

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00640 and BPHYT_RS00645 are separated by 25 nucleotidesBPHYT_RS00645 and BPHYT_RS00650 overlap by 4 nucleotides BPHYT_RS00640: BPHYT_RS00640 - acyl-CoA dehydrogenase, at 151,596 to 152,684 _RS00640 BPHYT_RS00645: BPHYT_RS00645 - diaminopimelate decarboxylase, at 152,710 to 153,918 _RS00645 BPHYT_RS00650: BPHYT_RS00650 - acyl-CoA ligase, at 153,915 to 155,534 _RS00650 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2at 151.783 kb on - strand, within BPHYT_RS00640at 151.833 kb on + strand, within BPHYT_RS00640at 151.833 kb on + strandat 151.833 kb on + strand, within BPHYT_RS00640at 151.834 kb on - strand, within BPHYT_RS00640at 151.933 kb on + strand, within BPHYT_RS00640at 151.990 kb on + strand, within BPHYT_RS00640at 151.990 kb on + strand, within BPHYT_RS00640at 151.991 kb on - strand, within BPHYT_RS00640at 152.070 kb on - strand, within BPHYT_RS00640at 152.099 kb on - strand, within BPHYT_RS00640at 152.099 kb on - strand, within BPHYT_RS00640at 152.144 kb on - strand, within BPHYT_RS00640at 152.166 kb on + strand, within BPHYT_RS00640at 152.309 kb on - strand, within BPHYT_RS00640at 152.309 kb on - strand, within BPHYT_RS00640at 152.318 kb on + strand, within BPHYT_RS00640at 152.319 kb on - strand, within BPHYT_RS00640at 152.351 kb on - strand, within BPHYT_RS00640at 152.650 kb on - strandat 152.650 kb on - strandat 152.880 kb on - strand, within BPHYT_RS00645at 152.897 kb on - strand, within BPHYT_RS00645at 152.897 kb on - strand, within BPHYT_RS00645at 153.050 kb on + strand, within BPHYT_RS00645at 153.050 kb on + strand, within BPHYT_RS00645at 153.050 kb on + strand, within BPHYT_RS00645at 153.050 kb on + strand, within BPHYT_RS00645at 153.050 kb on + strand, within BPHYT_RS00645at 153.050 kb on + strand, within BPHYT_RS00645at 153.050 kb on + strand, within BPHYT_RS00645at 153.051 kb on - strand, within BPHYT_RS00645at 153.051 kb on - strand, within BPHYT_RS00645at 153.068 kb on - strand, within BPHYT_RS00645at 153.074 kb on + strand, within BPHYT_RS00645at 153.075 kb on - strand, within BPHYT_RS00645at 153.229 kb on + strand, within BPHYT_RS00645at 153.229 kb on + strand, within BPHYT_RS00645at 153.230 kb on - strand, within BPHYT_RS00645at 153.707 kb on + strand, within BPHYT_RS00645at 153.819 kb on - strandat 153.870 kb on + strandat 154.030 kb on + strandat 154.040 kb on + strandat 154.057 kb on + strandat 154.057 kb on + strandat 154.057 kb on + strandat 154.058 kb on - strandat 154.058 kb on - strandat 154.128 kb on + strand, within BPHYT_RS00650at 154.128 kb on + strand, within BPHYT_RS00650at 154.129 kb on - strand, within BPHYT_RS00650at 154.279 kb on + strand, within BPHYT_RS00650at 154.591 kb on + strand, within BPHYT_RS00650at 154.591 kb on + strand, within BPHYT_RS00650at 154.592 kb on - strand, within BPHYT_RS00650at 154.667 kb on + strand, within BPHYT_RS00650at 154.668 kb on - strand, within BPHYT_RS00650at 154.678 kb on + strand, within BPHYT_RS00650at 154.722 kb on - strand, within BPHYT_RS00650

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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151,783 - BPHYT_RS00640 0.17 +0.1
151,833 + BPHYT_RS00640 0.22 -1.2
151,833 + -0.4
151,833 + BPHYT_RS00640 0.22 -0.5
151,834 - BPHYT_RS00640 0.22 -0.4
151,933 + BPHYT_RS00640 0.31 +0.2
151,990 + BPHYT_RS00640 0.36 +0.1
151,990 + BPHYT_RS00640 0.36 -0.9
151,991 - BPHYT_RS00640 0.36 -2.1
152,070 - BPHYT_RS00640 0.44 +0.0
152,099 - BPHYT_RS00640 0.46 -1.4
152,099 - BPHYT_RS00640 0.46 -1.1
152,144 - BPHYT_RS00640 0.50 +0.5
152,166 + BPHYT_RS00640 0.52 -0.4
152,309 - BPHYT_RS00640 0.65 +0.1
152,309 - BPHYT_RS00640 0.65 +0.0
152,318 + BPHYT_RS00640 0.66 -0.8
152,319 - BPHYT_RS00640 0.66 -0.4
152,351 - BPHYT_RS00640 0.69 +0.1
152,650 - +1.6
152,650 - -0.5
152,880 - BPHYT_RS00645 0.14 -0.8
152,897 - BPHYT_RS00645 0.15 -0.0
152,897 - BPHYT_RS00645 0.15 -0.7
153,050 + BPHYT_RS00645 0.28 -0.7
153,050 + BPHYT_RS00645 0.28 +1.9
153,050 + BPHYT_RS00645 0.28 -0.6
153,050 + BPHYT_RS00645 0.28 +1.4
153,050 + BPHYT_RS00645 0.28 +0.6
153,050 + BPHYT_RS00645 0.28 -0.5
153,050 + BPHYT_RS00645 0.28 -0.1
153,051 - BPHYT_RS00645 0.28 -0.6
153,051 - BPHYT_RS00645 0.28 +0.8
153,068 - BPHYT_RS00645 0.30 +0.3
153,074 + BPHYT_RS00645 0.30 -0.8
153,075 - BPHYT_RS00645 0.30 -0.4
153,229 + BPHYT_RS00645 0.43 +0.5
153,229 + BPHYT_RS00645 0.43 -0.8
153,230 - BPHYT_RS00645 0.43 +1.1
153,707 + BPHYT_RS00645 0.82 +0.7
153,819 - -0.0
153,870 + -0.7
154,030 + +0.1
154,040 + +0.1
154,057 + +0.2
154,057 + +0.6
154,057 + +0.1
154,058 - +0.2
154,058 - +1.6
154,128 + BPHYT_RS00650 0.13 -0.9
154,128 + BPHYT_RS00650 0.13 +2.3
154,129 - BPHYT_RS00650 0.13 -0.4
154,279 + BPHYT_RS00650 0.22 +0.0
154,591 + BPHYT_RS00650 0.42 +0.1
154,591 + BPHYT_RS00650 0.42 -0.2
154,592 - BPHYT_RS00650 0.42 -0.2
154,667 + BPHYT_RS00650 0.46 +0.3
154,668 - BPHYT_RS00650 0.46 +0.1
154,678 + BPHYT_RS00650 0.47 -0.1
154,722 - BPHYT_RS00650 0.50 -0.3

Or see this region's nucleotide sequence