Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36555

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS36555 and BPHYT_RS36560 are separated by 136 nucleotidesBPHYT_RS36560 and BPHYT_RS36565 overlap by 4 nucleotides BPHYT_RS36555: BPHYT_RS36555 - hypothetical protein, at 114,899 to 115,570 _RS36555 BPHYT_RS36560: BPHYT_RS36560 - hypothetical protein, at 115,707 to 115,979 _RS36560 BPHYT_RS36565: BPHYT_RS36565 - hypothetical protein, at 115,976 to 116,476 _RS36565 Position (kb) 114 115 116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 114.285 kb on + strandat 114.365 kb on + strandat 114.365 kb on + strandat 114.426 kb on + strandat 114.426 kb on + strandat 115.000 kb on + strand, within BPHYT_RS36555at 115.000 kb on + strand, within BPHYT_RS36555at 115.000 kb on + strand, within BPHYT_RS36555at 115.000 kb on + strand, within BPHYT_RS36555at 115.000 kb on + strand, within BPHYT_RS36555at 115.001 kb on - strandat 115.004 kb on - strand, within BPHYT_RS36555at 115.037 kb on + strand, within BPHYT_RS36555at 115.037 kb on + strand, within BPHYT_RS36555at 115.037 kb on + strand, within BPHYT_RS36555at 115.109 kb on + strand, within BPHYT_RS36555at 115.109 kb on + strand, within BPHYT_RS36555at 115.110 kb on - strand, within BPHYT_RS36555at 115.184 kb on + strand, within BPHYT_RS36555at 115.189 kb on + strand, within BPHYT_RS36555at 115.189 kb on + strand, within BPHYT_RS36555at 115.190 kb on - strand, within BPHYT_RS36555at 115.270 kb on + strand, within BPHYT_RS36555at 115.632 kb on + strandat 115.632 kb on + strandat 115.632 kb on + strandat 115.632 kb on + strandat 115.632 kb on + strandat 115.632 kb on + strandat 115.633 kb on - strandat 115.633 kb on - strandat 115.633 kb on - strandat 115.674 kb on + strandat 115.674 kb on + strandat 115.689 kb on + strandat 115.689 kb on + strandat 115.690 kb on - strandat 115.690 kb on - strandat 115.693 kb on + strandat 115.694 kb on - strandat 115.694 kb on - strandat 115.740 kb on + strand, within BPHYT_RS36560at 115.796 kb on + strand, within BPHYT_RS36560at 115.824 kb on - strand, within BPHYT_RS36560at 116.025 kb on + strandat 116.026 kb on - strand, within BPHYT_RS36565at 116.186 kb on + strand, within BPHYT_RS36565at 116.186 kb on + strand, within BPHYT_RS36565at 116.186 kb on + strand, within BPHYT_RS36565at 116.187 kb on - strand, within BPHYT_RS36565at 116.187 kb on - strand, within BPHYT_RS36565at 116.252 kb on + strand, within BPHYT_RS36565at 116.252 kb on + strand, within BPHYT_RS36565at 116.252 kb on + strand, within BPHYT_RS36565at 116.253 kb on - strand, within BPHYT_RS36565at 116.253 kb on - strand, within BPHYT_RS36565at 116.253 kb on - strand, within BPHYT_RS36565at 116.253 kb on - strand, within BPHYT_RS36565at 116.276 kb on + strand, within BPHYT_RS36565at 116.276 kb on + strand, within BPHYT_RS36565at 116.276 kb on + strand, within BPHYT_RS36565at 116.294 kb on + strand, within BPHYT_RS36565at 116.294 kb on + strand, within BPHYT_RS36565at 116.294 kb on + strand, within BPHYT_RS36565at 116.294 kb on + strand, within BPHYT_RS36565at 116.294 kb on + strand, within BPHYT_RS36565at 116.295 kb on - strand, within BPHYT_RS36565at 116.389 kb on + strand, within BPHYT_RS36565at 116.462 kb on - strandat 116.462 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
remove
114,285 + +0.2
114,365 + +0.2
114,365 + -2.0
114,426 + -0.5
114,426 + -0.0
115,000 + BPHYT_RS36555 0.15 +0.5
115,000 + BPHYT_RS36555 0.15 +0.0
115,000 + BPHYT_RS36555 0.15 -0.0
115,000 + BPHYT_RS36555 0.15 +0.7
115,000 + BPHYT_RS36555 0.15 +0.2
115,001 - +0.6
115,004 - BPHYT_RS36555 0.16 -0.8
115,037 + BPHYT_RS36555 0.21 +0.4
115,037 + BPHYT_RS36555 0.21 +0.6
115,037 + BPHYT_RS36555 0.21 +0.3
115,109 + BPHYT_RS36555 0.31 +0.3
115,109 + BPHYT_RS36555 0.31 +0.7
115,110 - BPHYT_RS36555 0.31 -0.3
115,184 + BPHYT_RS36555 0.42 +0.0
115,189 + BPHYT_RS36555 0.43 +0.5
115,189 + BPHYT_RS36555 0.43 +0.5
115,190 - BPHYT_RS36555 0.43 +0.8
115,270 + BPHYT_RS36555 0.55 -0.2
115,632 + +0.3
115,632 + -1.4
115,632 + +0.5
115,632 + +0.2
115,632 + +1.0
115,632 + +0.1
115,633 - -2.3
115,633 - +0.3
115,633 - +0.4
115,674 + -0.3
115,674 + +1.0
115,689 + -0.1
115,689 + +1.0
115,690 - +0.5
115,690 - -0.3
115,693 + -2.0
115,694 - +0.2
115,694 - +0.6
115,740 + BPHYT_RS36560 0.12 +0.3
115,796 + BPHYT_RS36560 0.33 +0.5
115,824 - BPHYT_RS36560 0.43 -0.2
116,025 + +0.0
116,026 - BPHYT_RS36565 0.10 +1.3
116,186 + BPHYT_RS36565 0.42 +0.0
116,186 + BPHYT_RS36565 0.42 +0.4
116,186 + BPHYT_RS36565 0.42 +0.0
116,187 - BPHYT_RS36565 0.42 -0.2
116,187 - BPHYT_RS36565 0.42 -0.5
116,252 + BPHYT_RS36565 0.55 -0.6
116,252 + BPHYT_RS36565 0.55 -0.1
116,252 + BPHYT_RS36565 0.55 -0.1
116,253 - BPHYT_RS36565 0.55 +0.8
116,253 - BPHYT_RS36565 0.55 -0.4
116,253 - BPHYT_RS36565 0.55 -0.5
116,253 - BPHYT_RS36565 0.55 +0.1
116,276 + BPHYT_RS36565 0.60 +0.0
116,276 + BPHYT_RS36565 0.60 +0.4
116,276 + BPHYT_RS36565 0.60 +0.0
116,294 + BPHYT_RS36565 0.63 +0.8
116,294 + BPHYT_RS36565 0.63 -1.0
116,294 + BPHYT_RS36565 0.63 +0.0
116,294 + BPHYT_RS36565 0.63 +0.1
116,294 + BPHYT_RS36565 0.63 -1.1
116,295 - BPHYT_RS36565 0.64 -3.8
116,389 + BPHYT_RS36565 0.82 +0.3
116,462 - +1.0
116,462 - +0.9

Or see this region's nucleotide sequence