Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36530 and BPHYT_RS36535 are separated by 85 nucleotides BPHYT_RS36535 and BPHYT_RS36540 are separated by 50 nucleotides BPHYT_RS36540 and BPHYT_RS36545 overlap by 4 nucleotides BPHYT_RS36545 and BPHYT_RS36550 are separated by 134 nucleotides
BPHYT_RS36530: BPHYT_RS36530 - hypothetical protein, at 111,168 to 111,620
_RS36530
BPHYT_RS36535: BPHYT_RS36535 - hypothetical protein, at 111,706 to 111,972
_RS36535
BPHYT_RS36540: BPHYT_RS36540 - hypothetical protein, at 112,023 to 112,214
_RS36540
BPHYT_RS36545: BPHYT_RS36545 - Resolvase helix-turn-helix domain-containing protein, at 112,211 to 112,597
_RS36545
BPHYT_RS36550: BPHYT_RS36550 - hypothetical protein, at 112,732 to 113,697
_RS36550
Position (kb) 112
113 Strain fitness (log2 ratio) -2
-1
0
1 at 111.270 kb on - strand, within BPHYT_RS36530 at 111.318 kb on + strand, within BPHYT_RS36530 at 111.318 kb on + strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.319 kb on - strand, within BPHYT_RS36530 at 111.402 kb on - strand, within BPHYT_RS36530 at 111.411 kb on + strand, within BPHYT_RS36530 at 111.536 kb on - strand, within BPHYT_RS36530 at 111.618 kb on + strand at 111.619 kb on - strand at 111.682 kb on - strand at 111.682 kb on - strand at 111.691 kb on + strand at 111.728 kb on + strand at 111.886 kb on + strand, within BPHYT_RS36535 at 111.886 kb on + strand, within BPHYT_RS36535 at 111.887 kb on - strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 111.930 kb on + strand, within BPHYT_RS36535 at 112.012 kb on - strand at 112.028 kb on + strand at 112.074 kb on + strand, within BPHYT_RS36540 at 112.154 kb on - strand, within BPHYT_RS36540 at 112.206 kb on - strand at 112.324 kb on + strand at 112.401 kb on + strand, within BPHYT_RS36545 at 112.481 kb on + strand, within BPHYT_RS36545 at 112.485 kb on + strand, within BPHYT_RS36545 at 112.550 kb on + strand, within BPHYT_RS36545
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 111,270 - BPHYT_RS36530 0.23 +0.4 111,318 + BPHYT_RS36530 0.33 -0.5 111,318 + BPHYT_RS36530 0.33 -0.7 111,319 - BPHYT_RS36530 0.33 -0.7 111,319 - BPHYT_RS36530 0.33 +0.4 111,319 - BPHYT_RS36530 0.33 +1.2 111,402 - BPHYT_RS36530 0.52 -1.0 111,411 + BPHYT_RS36530 0.54 -2.3 111,536 - BPHYT_RS36530 0.81 -0.0 111,618 + -0.2 111,619 - -0.4 111,682 - -2.1 111,682 - +0.3 111,691 + -0.7 111,728 + -1.0 111,886 + BPHYT_RS36535 0.67 -0.2 111,886 + BPHYT_RS36535 0.67 -0.6 111,887 - BPHYT_RS36535 0.68 -0.2 111,930 + BPHYT_RS36535 0.84 -0.7 111,930 + BPHYT_RS36535 0.84 -0.8 111,930 + BPHYT_RS36535 0.84 -0.4 112,012 - +0.5 112,028 + -0.6 112,074 + BPHYT_RS36540 0.27 +0.0 112,154 - BPHYT_RS36540 0.68 +1.7 112,206 - -0.2 112,324 + +0.0 112,401 + BPHYT_RS36545 0.49 -0.2 112,481 + BPHYT_RS36545 0.70 -0.7 112,485 + BPHYT_RS36545 0.71 -0.4 112,550 + BPHYT_RS36545 0.88 +0.7
Or see this region's nucleotide sequence