Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35855 and BPHYT_RS35860 are separated by 23 nucleotides BPHYT_RS35860 and BPHYT_RS35865 are separated by 358 nucleotides BPHYT_RS35865 and BPHYT_RS35870 are separated by 72 nucleotides
BPHYT_RS35855: BPHYT_RS35855 - type II secretion system protein E, at 4,608 to 6,626
_RS35855
BPHYT_RS35860: BPHYT_RS35860 - type II secretory pathway component PulF-like protein, at 6,650 to 7,768
_RS35860
BPHYT_RS35865: BPHYT_RS35865 - hypothetical protein, at 8,127 to 8,426
_RS35865
BPHYT_RS35870: BPHYT_RS35870 - hypothetical protein, at 8,499 to 9,779
_RS35870
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.920 kb on + strand, within BPHYT_RS35855 at 5.952 kb on - strand, within BPHYT_RS35855 at 5.952 kb on - strand, within BPHYT_RS35855 at 6.298 kb on - strand, within BPHYT_RS35855 at 6.386 kb on + strand, within BPHYT_RS35855 at 6.489 kb on + strand at 6.580 kb on + strand at 6.581 kb on - strand at 6.649 kb on + strand at 6.649 kb on + strand at 6.650 kb on - strand at 6.650 kb on - strand at 6.675 kb on + strand at 6.675 kb on + strand at 6.676 kb on - strand at 6.741 kb on - strand at 6.741 kb on - strand at 6.931 kb on + strand, within BPHYT_RS35860 at 6.932 kb on - strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.149 kb on + strand, within BPHYT_RS35860 at 7.150 kb on - strand, within BPHYT_RS35860 at 7.150 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.185 kb on - strand, within BPHYT_RS35860 at 7.265 kb on + strand, within BPHYT_RS35860 at 7.712 kb on + strand at 7.757 kb on + strand at 7.757 kb on + strand at 7.777 kb on - strand at 7.944 kb on + strand at 7.944 kb on + strand at 7.945 kb on - strand at 7.983 kb on - strand at 8.036 kb on + strand at 8.088 kb on - strand at 8.129 kb on + strand at 8.129 kb on + strand at 8.130 kb on - strand at 8.143 kb on - strand at 8.247 kb on + strand, within BPHYT_RS35865 at 8.247 kb on + strand, within BPHYT_RS35865 at 8.247 kb on + strand, within BPHYT_RS35865 at 8.248 kb on - strand, within BPHYT_RS35865 at 8.396 kb on + strand, within BPHYT_RS35865 at 8.397 kb on - strand at 8.498 kb on - strand at 8.535 kb on - strand at 8.543 kb on + strand at 8.616 kb on + strand at 8.616 kb on + strand at 8.616 kb on + strand at 8.618 kb on + strand at 8.618 kb on + strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.619 kb on - strand at 8.622 kb on + strand at 8.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 5,920 + BPHYT_RS35855 0.65 -0.7 5,952 - BPHYT_RS35855 0.67 -0.6 5,952 - BPHYT_RS35855 0.67 -1.0 6,298 - BPHYT_RS35855 0.84 +0.0 6,386 + BPHYT_RS35855 0.88 -0.4 6,489 + +0.7 6,580 + -0.8 6,581 - +0.0 6,649 + +1.0 6,649 + -0.1 6,650 - -0.2 6,650 - +0.3 6,675 + +0.0 6,675 + -0.5 6,676 - +2.2 6,741 - -1.1 6,741 - +1.9 6,931 + BPHYT_RS35860 0.25 +0.4 6,932 - BPHYT_RS35860 0.25 -0.4 7,149 + BPHYT_RS35860 0.45 +0.3 7,149 + BPHYT_RS35860 0.45 +0.9 7,149 + BPHYT_RS35860 0.45 -0.1 7,150 - BPHYT_RS35860 0.45 +0.8 7,150 - BPHYT_RS35860 0.45 +1.1 7,185 - BPHYT_RS35860 0.48 +0.8 7,185 - BPHYT_RS35860 0.48 +0.6 7,185 - BPHYT_RS35860 0.48 +0.7 7,265 + BPHYT_RS35860 0.55 +0.3 7,712 + -0.1 7,757 + +2.2 7,757 + -0.2 7,777 - +0.6 7,944 + -0.7 7,944 + -0.0 7,945 - -0.4 7,983 - +0.7 8,036 + +1.2 8,088 - -0.5 8,129 + +0.8 8,129 + -0.4 8,130 - +0.2 8,143 - +0.4 8,247 + BPHYT_RS35865 0.40 +0.4 8,247 + BPHYT_RS35865 0.40 +0.3 8,247 + BPHYT_RS35865 0.40 +1.6 8,248 - BPHYT_RS35865 0.40 +0.9 8,396 + BPHYT_RS35865 0.90 -2.0 8,397 - -0.2 8,498 - +2.5 8,535 - +0.7 8,543 + +0.2 8,616 + +0.7 8,616 + +0.4 8,616 + -1.0 8,618 + +0.0 8,618 + +1.1 8,619 - -0.1 8,619 - +0.6 8,619 - -0.1 8,619 - +0.0 8,619 - +1.0 8,619 - +0.2 8,619 - -1.3 8,622 + -0.2 8,623 - +0.6
Or see this region's nucleotide sequence