Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35550 and BPHYT_RS35555 overlap by 8 nucleotides BPHYT_RS35555 and BPHYT_RS35560 are separated by 88 nucleotides BPHYT_RS35560 and BPHYT_RS35565 are separated by 54 nucleotides BPHYT_RS35565 and BPHYT_RS35570 are separated by 410 nucleotides BPHYT_RS35570 and BPHYT_RS35575 are separated by 177 nucleotides
BPHYT_RS35550: BPHYT_RS35550 - nitrile hydratase, at 3,573,370 to 3,574,041
_RS35550
BPHYT_RS35555: BPHYT_RS35555 - hypothetical protein, at 3,574,034 to 3,574,402
_RS35555
BPHYT_RS35560: BPHYT_RS35560 - endoribonuclease L-PSP, at 3,574,491 to 3,574,976
_RS35560
BPHYT_RS35565: BPHYT_RS35565 - activator of HSP90 ATPase, at 3,575,031 to 3,575,477
_RS35565
BPHYT_RS35570: BPHYT_RS35570 - hypothetical protein, at 3,575,888 to 3,576,139
_RS35570
BPHYT_RS35575: BPHYT_RS35575 - transcriptional regulator, at 3,576,317 to 3,576,775
_RS35575
Position (kb) 3575
3576 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3574.260 kb on - strand, within BPHYT_RS35555 at 3574.263 kb on - strand, within BPHYT_RS35555 at 3574.724 kb on - strand, within BPHYT_RS35560 at 3574.743 kb on - strand, within BPHYT_RS35560 at 3575.032 kb on + strand at 3575.095 kb on + strand, within BPHYT_RS35565 at 3575.096 kb on - strand, within BPHYT_RS35565 at 3575.264 kb on - strand, within BPHYT_RS35565 at 3575.336 kb on + strand, within BPHYT_RS35565 at 3575.391 kb on + strand, within BPHYT_RS35565 at 3575.512 kb on - strand at 3575.612 kb on + strand at 3575.635 kb on - strand at 3575.766 kb on + strand at 3576.075 kb on - strand, within BPHYT_RS35570 at 3576.081 kb on + strand, within BPHYT_RS35570 at 3576.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 3,574,260 - BPHYT_RS35555 0.61 +1.4 3,574,263 - BPHYT_RS35555 0.62 +1.7 3,574,724 - BPHYT_RS35560 0.48 +0.7 3,574,743 - BPHYT_RS35560 0.52 +2.7 3,575,032 + -0.2 3,575,095 + BPHYT_RS35565 0.14 +0.9 3,575,096 - BPHYT_RS35565 0.15 -0.2 3,575,264 - BPHYT_RS35565 0.52 +0.7 3,575,336 + BPHYT_RS35565 0.68 -0.6 3,575,391 + BPHYT_RS35565 0.81 -0.4 3,575,512 - +0.4 3,575,612 + +0.8 3,575,635 - +0.4 3,575,766 + -1.8 3,576,075 - BPHYT_RS35570 0.74 +0.4 3,576,081 + BPHYT_RS35570 0.77 -0.4 3,576,231 + +0.3
Or see this region's nucleotide sequence