Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35490

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35485 and BPHYT_RS35490 are separated by 299 nucleotidesBPHYT_RS35490 and BPHYT_RS35495 are separated by 346 nucleotidesBPHYT_RS35495 and BPHYT_RS35500 are separated by 50 nucleotides BPHYT_RS35485: BPHYT_RS35485 - hypothetical protein, at 3,562,210 to 3,563,556 _RS35485 BPHYT_RS35490: BPHYT_RS35490 - hypothetical protein, at 3,563,856 to 3,564,416 _RS35490 BPHYT_RS35495: BPHYT_RS35495 - nucleotide pyrophosphohydrolase, at 3,564,763 to 3,565,134 _RS35495 BPHYT_RS35500: BPHYT_RS35500 - major facilitator transporter, at 3,565,185 to 3,566,621 _RS35500 Position (kb) 3563 3564 3565Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3563.179 kb on + strand, within BPHYT_RS35485at 3563.179 kb on + strand, within BPHYT_RS35485at 3563.278 kb on + strand, within BPHYT_RS35485at 3563.345 kb on - strand, within BPHYT_RS35485at 3563.345 kb on - strand, within BPHYT_RS35485at 3563.814 kb on + strandat 3563.951 kb on + strand, within BPHYT_RS35490at 3563.951 kb on + strand, within BPHYT_RS35490at 3563.993 kb on + strand, within BPHYT_RS35490at 3563.994 kb on - strand, within BPHYT_RS35490at 3564.016 kb on + strand, within BPHYT_RS35490at 3564.016 kb on + strand, within BPHYT_RS35490at 3564.017 kb on - strand, within BPHYT_RS35490at 3564.262 kb on + strand, within BPHYT_RS35490at 3564.472 kb on + strandat 3564.714 kb on - strandat 3564.998 kb on - strand, within BPHYT_RS35495at 3565.362 kb on + strand, within BPHYT_RS35500at 3565.363 kb on - strand, within BPHYT_RS35500at 3565.363 kb on - strand, within BPHYT_RS35500

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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3,563,179 + BPHYT_RS35485 0.72 -0.2
3,563,179 + BPHYT_RS35485 0.72 -0.6
3,563,278 + BPHYT_RS35485 0.79 +1.4
3,563,345 - BPHYT_RS35485 0.84 +0.8
3,563,345 - BPHYT_RS35485 0.84 -1.8
3,563,814 + -0.8
3,563,951 + BPHYT_RS35490 0.17 +0.1
3,563,951 + BPHYT_RS35490 0.17 -1.6
3,563,993 + BPHYT_RS35490 0.24 -2.2
3,563,994 - BPHYT_RS35490 0.25 +0.4
3,564,016 + BPHYT_RS35490 0.29 +0.7
3,564,016 + BPHYT_RS35490 0.29 -0.2
3,564,017 - BPHYT_RS35490 0.29 +0.0
3,564,262 + BPHYT_RS35490 0.72 +0.2
3,564,472 + -0.6
3,564,714 - -0.2
3,564,998 - BPHYT_RS35495 0.63 +1.4
3,565,362 + BPHYT_RS35500 0.12 -0.1
3,565,363 - BPHYT_RS35500 0.12 -0.0
3,565,363 - BPHYT_RS35500 0.12 +3.0

Or see this region's nucleotide sequence