Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34960

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS34950 and BPHYT_RS34955 are separated by 45 nucleotidesBPHYT_RS34955 and BPHYT_RS34960 are separated by 0 nucleotidesBPHYT_RS34960 and BPHYT_RS34965 overlap by 1 nucleotidesBPHYT_RS34965 and BPHYT_RS34970 overlap by 8 nucleotides BPHYT_RS34950: BPHYT_RS34950 - cupin, at 3,441,247 to 3,441,774 _RS34950 BPHYT_RS34955: BPHYT_RS34955 - alpha/beta hydrolase, at 3,441,820 to 3,442,710 _RS34955 BPHYT_RS34960: BPHYT_RS34960 - IclR family transcriptional regulator, at 3,442,711 to 3,443,595 _RS34960 BPHYT_RS34965: BPHYT_RS34965 - short-chain dehydrogenase, at 3,443,595 to 3,444,392 _RS34965 BPHYT_RS34970: BPHYT_RS34970 - hypothetical protein, at 3,444,385 to 3,446,043 _RS34970 Position (kb) 3442 3443 3444Strain fitness (log2 ratio) -2 -1 0 1at 3441.724 kb on - strandat 3441.724 kb on - strandat 3441.841 kb on - strandat 3443.536 kb on + strandat 3444.315 kb on + strandat 3444.324 kb on - strandat 3444.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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3,441,724 - -0.2
3,441,724 - +1.4
3,441,841 - -0.6
3,443,536 + +1.4
3,444,315 + +0.4
3,444,324 - -0.9
3,444,339 + -2.1

Or see this region's nucleotide sequence