Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34950 and BPHYT_RS34955 are separated by 45 nucleotides BPHYT_RS34955 and BPHYT_RS34960 are separated by 0 nucleotides BPHYT_RS34960 and BPHYT_RS34965 overlap by 1 nucleotides BPHYT_RS34965 and BPHYT_RS34970 overlap by 8 nucleotides
BPHYT_RS34950: BPHYT_RS34950 - cupin, at 3,441,247 to 3,441,774
_RS34950
BPHYT_RS34955: BPHYT_RS34955 - alpha/beta hydrolase, at 3,441,820 to 3,442,710
_RS34955
BPHYT_RS34960: BPHYT_RS34960 - IclR family transcriptional regulator, at 3,442,711 to 3,443,595
_RS34960
BPHYT_RS34965: BPHYT_RS34965 - short-chain dehydrogenase, at 3,443,595 to 3,444,392
_RS34965
BPHYT_RS34970: BPHYT_RS34970 - hypothetical protein, at 3,444,385 to 3,446,043
_RS34970
Position (kb)
3442
3443
3444 Strain fitness (log2 ratio)
-2
-1
0
1 at 3441.724 kb on - strand at 3441.724 kb on - strand at 3441.841 kb on - strand at 3443.536 kb on + strand at 3444.315 kb on + strand at 3444.324 kb on - strand at 3444.339 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 3,441,724 - -0.2 3,441,724 - +1.4 3,441,841 - -0.6 3,443,536 + +1.4 3,444,315 + +0.4 3,444,324 - -0.9 3,444,339 + -2.1
Or see this region's nucleotide sequence