Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31420

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31410 and BPHYT_RS31415 are separated by 23 nucleotidesBPHYT_RS31415 and BPHYT_RS31420 are separated by 54 nucleotidesBPHYT_RS31420 and BPHYT_RS31425 are separated by 33 nucleotidesBPHYT_RS31425 and BPHYT_RS31430 are separated by 52 nucleotides BPHYT_RS31410: BPHYT_RS31410 - D-amino acid oxidase, at 2,601,630 to 2,602,970 _RS31410 BPHYT_RS31415: BPHYT_RS31415 - amino acid ABC transporter permease, at 2,602,994 to 2,603,791 _RS31415 BPHYT_RS31420: BPHYT_RS31420 - ABC transporter substrate-binding protein, at 2,603,846 to 2,604,658 _RS31420 BPHYT_RS31425: BPHYT_RS31425 - arginine ABC transporter ATP-binding protein, at 2,604,692 to 2,605,393 _RS31425 BPHYT_RS31430: BPHYT_RS31430 - FAD-dependent oxidoreductase, at 2,605,446 to 2,606,771 _RS31430 Position (kb) 2603 2604 2605Strain fitness (log2 ratio) -1 0 1 2at 2602.881 kb on + strandat 2603.272 kb on - strand, within BPHYT_RS31415at 2604.181 kb on - strand, within BPHYT_RS31420at 2604.650 kb on + strandat 2604.996 kb on + strand, within BPHYT_RS31425at 2605.363 kb on - strandat 2605.428 kb on - strandat 2605.602 kb on - strand, within BPHYT_RS31430

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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2,602,881 + +0.2
2,603,272 - BPHYT_RS31415 0.35 +0.5
2,604,181 - BPHYT_RS31420 0.41 -0.6
2,604,650 + +0.8
2,604,996 + BPHYT_RS31425 0.43 -0.1
2,605,363 - -0.1
2,605,428 - +2.2
2,605,602 - BPHYT_RS31430 0.12 -1.0

Or see this region's nucleotide sequence