Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30890 and BPHYT_RS30895 are separated by 128 nucleotides BPHYT_RS30895 and BPHYT_RS30900 are separated by 417 nucleotides BPHYT_RS30900 and BPHYT_RS30905 overlap by 23 nucleotides
BPHYT_RS30890: BPHYT_RS30890 - hypothetical protein, at 2,484,292 to 2,485,062
_RS30890
BPHYT_RS30895: BPHYT_RS30895 - hypothetical protein, at 2,485,191 to 2,485,400
_RS30895
BPHYT_RS30900: BPHYT_RS30900 - transcriptional regulator, at 2,485,818 to 2,486,450
_RS30900
BPHYT_RS30905: BPHYT_RS30905 - histidine kinase, at 2,486,428 to 2,488,089
_RS30905
Position (kb) 2485
2486
2487 Strain fitness (log2 ratio) -1
0
1 at 2485.600 kb on - strand at 2485.984 kb on - strand, within BPHYT_RS30900 at 2485.987 kb on - strand, within BPHYT_RS30900 at 2486.150 kb on - strand, within BPHYT_RS30900 at 2486.984 kb on - strand, within BPHYT_RS30905 at 2487.321 kb on - strand, within BPHYT_RS30905
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 2,485,600 - -0.0 2,485,984 - BPHYT_RS30900 0.26 +0.6 2,485,987 - BPHYT_RS30900 0.27 -0.2 2,486,150 - BPHYT_RS30900 0.52 +0.2 2,486,984 - BPHYT_RS30905 0.33 +0.9 2,487,321 - BPHYT_RS30905 0.54 -1.5
Or see this region's nucleotide sequence