Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28565

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28560 and BPHYT_RS28565 are separated by 9 nucleotidesBPHYT_RS28565 and BPHYT_RS28570 are separated by 64 nucleotides BPHYT_RS28560: BPHYT_RS28560 - ABC transporter permease, at 1,962,391 to 1,963,461 _RS28560 BPHYT_RS28565: BPHYT_RS28565 - ABC transporter permease, at 1,963,471 to 1,964,340 _RS28565 BPHYT_RS28570: BPHYT_RS28570 - urea ABC transporter substrate-binding protein, at 1,964,405 to 1,965,640 _RS28570 Position (kb) 1963 1964 1965Strain fitness (log2 ratio) -1 0 1at 1962.704 kb on + strand, within BPHYT_RS28560at 1962.995 kb on + strand, within BPHYT_RS28560at 1963.107 kb on + strand, within BPHYT_RS28560at 1963.232 kb on + strand, within BPHYT_RS28560at 1963.472 kb on + strandat 1964.832 kb on + strand, within BPHYT_RS28570

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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1,962,704 + BPHYT_RS28560 0.29 -0.2
1,962,995 + BPHYT_RS28560 0.56 +0.4
1,963,107 + BPHYT_RS28560 0.67 -0.1
1,963,232 + BPHYT_RS28560 0.79 -1.2
1,963,472 + -0.2
1,964,832 + BPHYT_RS28570 0.35 +0.4

Or see this region's nucleotide sequence