Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28550 and BPHYT_RS28555 overlap by 4 nucleotides BPHYT_RS28555 and BPHYT_RS28560 overlap by 4 nucleotides BPHYT_RS28560 and BPHYT_RS28565 are separated by 9 nucleotides BPHYT_RS28565 and BPHYT_RS28570 are separated by 64 nucleotides
BPHYT_RS28550: BPHYT_RS28550 - ABC transporter, at 1,960,980 to 1,961,687
_RS28550
BPHYT_RS28555: BPHYT_RS28555 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,961,684 to 1,962,394
_RS28555
BPHYT_RS28560: BPHYT_RS28560 - ABC transporter permease, at 1,962,391 to 1,963,461
_RS28560
BPHYT_RS28565: BPHYT_RS28565 - ABC transporter permease, at 1,963,471 to 1,964,340
_RS28565
BPHYT_RS28570: BPHYT_RS28570 - urea ABC transporter substrate-binding protein, at 1,964,405 to 1,965,640
_RS28570
Position (kb) 1962
1963
1964 Strain fitness (log2 ratio) -1
0
1 at 1962.704 kb on + strand, within BPHYT_RS28560 at 1962.995 kb on + strand, within BPHYT_RS28560 at 1963.107 kb on + strand, within BPHYT_RS28560 at 1963.232 kb on + strand, within BPHYT_RS28560 at 1963.472 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,962,704 + BPHYT_RS28560 0.29 -0.2 1,962,995 + BPHYT_RS28560 0.56 +0.4 1,963,107 + BPHYT_RS28560 0.67 -0.1 1,963,232 + BPHYT_RS28560 0.79 -1.2 1,963,472 + -0.2
Or see this region's nucleotide sequence