Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28545 and BPHYT_RS28550 are separated by 13 nucleotides BPHYT_RS28550 and BPHYT_RS28555 overlap by 4 nucleotides BPHYT_RS28555 and BPHYT_RS28560 overlap by 4 nucleotides
BPHYT_RS28545: BPHYT_RS28545 - acetamidase, at 1,959,980 to 1,960,966
_RS28545
BPHYT_RS28550: BPHYT_RS28550 - ABC transporter, at 1,960,980 to 1,961,687
_RS28550
BPHYT_RS28555: BPHYT_RS28555 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,961,684 to 1,962,394
_RS28555
BPHYT_RS28560: BPHYT_RS28560 - ABC transporter permease, at 1,962,391 to 1,963,461
_RS28560
Position (kb) 1960
1961
1962 Strain fitness (log2 ratio) -1
0
1 at 1959.981 kb on + strand at 1960.049 kb on + strand at 1960.077 kb on + strand at 1960.077 kb on + strand at 1960.077 kb on + strand at 1960.102 kb on - strand, within BPHYT_RS28545 at 1960.576 kb on - strand, within BPHYT_RS28545
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,959,981 + +0.4 1,960,049 + -1.7 1,960,077 + -0.7 1,960,077 + -0.6 1,960,077 + -0.1 1,960,102 - BPHYT_RS28545 0.12 -1.2 1,960,576 - BPHYT_RS28545 0.60 -0.9
Or see this region's nucleotide sequence