Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27150 and BPHYT_RS27155 are separated by 191 nucleotides BPHYT_RS27155 and BPHYT_RS27160 are separated by 349 nucleotides BPHYT_RS27160 and BPHYT_RS27165 are separated by 259 nucleotides BPHYT_RS27165 and BPHYT_RS27170 are separated by 32 nucleotides
BPHYT_RS27150: BPHYT_RS27150 - patatin, at 1,669,513 to 1,670,625
_RS27150
BPHYT_RS27155: BPHYT_RS27155 - peroxiredoxin, at 1,670,817 to 1,671,242
_RS27155
BPHYT_RS27160: BPHYT_RS27160 - hypothetical protein, at 1,671,592 to 1,671,900
_RS27160
BPHYT_RS27165: BPHYT_RS27165 - 4-carboxymuconolactone decarboxylase, at 1,672,160 to 1,672,714
_RS27165
BPHYT_RS27170: BPHYT_RS27170 - hypothetical protein, at 1,672,747 to 1,674,075
_RS27170
Position (kb) 1671
1672 Strain fitness (log2 ratio) -1
0
1
2 at 1670.634 kb on - strand at 1671.149 kb on - strand, within BPHYT_RS27155 at 1671.751 kb on + strand, within BPHYT_RS27160 at 1671.969 kb on - strand at 1672.102 kb on + strand at 1672.131 kb on + strand at 1672.131 kb on + strand at 1672.161 kb on + strand at 1672.161 kb on + strand at 1672.191 kb on - strand at 1672.239 kb on + strand, within BPHYT_RS27165 at 1672.239 kb on + strand, within BPHYT_RS27165 at 1672.461 kb on + strand, within BPHYT_RS27165 at 1672.461 kb on + strand, within BPHYT_RS27165 at 1672.461 kb on + strand, within BPHYT_RS27165 at 1672.462 kb on - strand, within BPHYT_RS27165 at 1672.592 kb on - strand, within BPHYT_RS27165 at 1672.886 kb on + strand, within BPHYT_RS27170
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,670,634 - -1.4 1,671,149 - BPHYT_RS27155 0.78 -0.4 1,671,751 + BPHYT_RS27160 0.51 +0.2 1,671,969 - +2.0 1,672,102 + -0.4 1,672,131 + -0.6 1,672,131 + -1.5 1,672,161 + -0.6 1,672,161 + +0.4 1,672,191 - +1.4 1,672,239 + BPHYT_RS27165 0.14 +0.4 1,672,239 + BPHYT_RS27165 0.14 -0.2 1,672,461 + BPHYT_RS27165 0.54 -0.2 1,672,461 + BPHYT_RS27165 0.54 +0.5 1,672,461 + BPHYT_RS27165 0.54 +0.3 1,672,462 - BPHYT_RS27165 0.54 +0.2 1,672,592 - BPHYT_RS27165 0.78 +0.1 1,672,886 + BPHYT_RS27170 0.10 -0.3
Or see this region's nucleotide sequence