Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27020 and BPHYT_RS27025 are separated by 119 nucleotides BPHYT_RS27025 and BPHYT_RS27030 are separated by 92 nucleotides BPHYT_RS27030 and BPHYT_RS27035 overlap by 4 nucleotides BPHYT_RS27035 and BPHYT_RS27040 are separated by 94 nucleotides
BPHYT_RS27020: BPHYT_RS27020 - hypothetical protein, at 1,640,093 to 1,640,335
_RS27020
BPHYT_RS27025: BPHYT_RS27025 - membrane protein, at 1,640,455 to 1,641,036
_RS27025
BPHYT_RS27030: BPHYT_RS27030 - transcriptional regulator, at 1,641,129 to 1,641,473
_RS27030
BPHYT_RS27035: BPHYT_RS27035 - membrane protein, at 1,641,470 to 1,642,033
_RS27035
BPHYT_RS27040: BPHYT_RS27040 - permease, at 1,642,128 to 1,642,679
_RS27040
Position (kb) 1641
1642 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1640.412 kb on + strand at 1641.010 kb on - strand at 1641.036 kb on + strand at 1641.192 kb on + strand, within BPHYT_RS27030 at 1642.013 kb on + strand at 1642.462 kb on + strand, within BPHYT_RS27040
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,640,412 + +0.1 1,641,010 - +0.4 1,641,036 + -0.9 1,641,192 + BPHYT_RS27030 0.18 -1.9 1,642,013 + +0.1 1,642,462 + BPHYT_RS27040 0.61 +2.3
Or see this region's nucleotide sequence