Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26700 and BPHYT_RS26705 overlap by 4 nucleotides BPHYT_RS26705 and BPHYT_RS26710 are separated by 20 nucleotides BPHYT_RS26710 and BPHYT_RS26715 are separated by 266 nucleotides
BPHYT_RS26700: BPHYT_RS26700 - hypothetical protein, at 1,558,953 to 1,559,564
_RS26700
BPHYT_RS26705: BPHYT_RS26705 - hypothetical protein, at 1,559,561 to 1,560,043
_RS26705
BPHYT_RS26710: BPHYT_RS26710 - Hcp1 family type VI secretion system effector, at 1,560,064 to 1,560,540
_RS26710
BPHYT_RS26715: BPHYT_RS26715 - GTP-binding protein, at 1,560,807 to 1,563,431
_RS26715
Position (kb) 1560
1561 Strain fitness (log2 ratio) -1
0
1
2 at 1559.064 kb on + strand, within BPHYT_RS26700 at 1559.145 kb on + strand, within BPHYT_RS26700 at 1559.159 kb on - strand, within BPHYT_RS26700 at 1559.183 kb on - strand, within BPHYT_RS26700 at 1559.199 kb on - strand, within BPHYT_RS26700 at 1559.492 kb on - strand, within BPHYT_RS26700 at 1559.680 kb on + strand, within BPHYT_RS26705 at 1559.681 kb on - strand, within BPHYT_RS26705 at 1559.881 kb on - strand, within BPHYT_RS26705 at 1559.883 kb on + strand, within BPHYT_RS26705 at 1559.884 kb on - strand, within BPHYT_RS26705 at 1560.034 kb on + strand at 1560.035 kb on - strand at 1560.044 kb on - strand at 1560.089 kb on + strand at 1560.089 kb on + strand at 1560.089 kb on + strand at 1560.090 kb on - strand at 1560.090 kb on - strand at 1560.090 kb on - strand at 1560.144 kb on - strand, within BPHYT_RS26710 at 1560.236 kb on + strand, within BPHYT_RS26710 at 1560.237 kb on - strand, within BPHYT_RS26710 at 1560.237 kb on - strand, within BPHYT_RS26710 at 1560.326 kb on + strand, within BPHYT_RS26710 at 1560.542 kb on - strand at 1560.622 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,559,064 + BPHYT_RS26700 0.18 -0.6 1,559,145 + BPHYT_RS26700 0.31 +0.2 1,559,159 - BPHYT_RS26700 0.34 -0.2 1,559,183 - BPHYT_RS26700 0.38 +0.2 1,559,199 - BPHYT_RS26700 0.40 +0.2 1,559,492 - BPHYT_RS26700 0.88 +0.2 1,559,680 + BPHYT_RS26705 0.25 -0.2 1,559,681 - BPHYT_RS26705 0.25 -0.7 1,559,881 - BPHYT_RS26705 0.66 -0.6 1,559,883 + BPHYT_RS26705 0.67 -1.0 1,559,884 - BPHYT_RS26705 0.67 +0.1 1,560,034 + -0.1 1,560,035 - +0.4 1,560,044 - +1.4 1,560,089 + +0.2 1,560,089 + -0.0 1,560,089 + +2.0 1,560,090 - +0.4 1,560,090 - +1.0 1,560,090 - -0.4 1,560,144 - BPHYT_RS26710 0.17 -1.4 1,560,236 + BPHYT_RS26710 0.36 -0.2 1,560,237 - BPHYT_RS26710 0.36 -0.9 1,560,237 - BPHYT_RS26710 0.36 +0.1 1,560,326 + BPHYT_RS26710 0.55 +1.1 1,560,542 - -0.6 1,560,622 + +0.4
Or see this region's nucleotide sequence