Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26235 and BPHYT_RS26240 are separated by 145 nucleotides BPHYT_RS26240 and BPHYT_RS26245 are separated by 259 nucleotides BPHYT_RS26245 and BPHYT_RS26250 are separated by 51 nucleotides BPHYT_RS26250 and BPHYT_RS26255 are separated by 16 nucleotides
BPHYT_RS26235: BPHYT_RS26235 - hypothetical protein, at 1,457,502 to 1,458,038
_RS26235
BPHYT_RS26240: BPHYT_RS26240 - hypothetical protein, at 1,458,184 to 1,458,480
_RS26240
BPHYT_RS26245: BPHYT_RS26245 - thioredoxin, at 1,458,740 to 1,459,060
_RS26245
BPHYT_RS26250: BPHYT_RS26250 - hypothetical protein, at 1,459,112 to 1,459,531
_RS26250
BPHYT_RS26255: BPHYT_RS26255 - lipase, at 1,459,548 to 1,460,570
_RS26255
Position (kb) 1458
1459
1460 Strain fitness (log2 ratio) -2
-1
0
1 at 1458.151 kb on + strand at 1458.240 kb on - strand, within BPHYT_RS26240 at 1458.240 kb on - strand, within BPHYT_RS26240 at 1458.240 kb on - strand, within BPHYT_RS26240 at 1458.240 kb on - strand, within BPHYT_RS26240 at 1458.394 kb on + strand, within BPHYT_RS26240 at 1458.465 kb on - strand at 1458.561 kb on + strand at 1458.659 kb on - strand at 1458.759 kb on - strand at 1459.059 kb on - strand at 1459.085 kb on - strand at 1459.085 kb on - strand at 1459.244 kb on - strand, within BPHYT_RS26250 at 1459.244 kb on - strand, within BPHYT_RS26250 at 1459.308 kb on - strand, within BPHYT_RS26250 at 1459.464 kb on + strand, within BPHYT_RS26250 at 1459.464 kb on + strand, within BPHYT_RS26250 at 1459.465 kb on - strand, within BPHYT_RS26250 at 1459.465 kb on - strand, within BPHYT_RS26250 at 1459.467 kb on - strand, within BPHYT_RS26250 at 1459.841 kb on + strand, within BPHYT_RS26255 at 1459.900 kb on + strand, within BPHYT_RS26255 at 1459.900 kb on + strand, within BPHYT_RS26255 at 1459.936 kb on + strand, within BPHYT_RS26255
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,458,151 + +0.4 1,458,240 - BPHYT_RS26240 0.19 -1.8 1,458,240 - BPHYT_RS26240 0.19 +1.0 1,458,240 - BPHYT_RS26240 0.19 -0.3 1,458,240 - BPHYT_RS26240 0.19 -0.6 1,458,394 + BPHYT_RS26240 0.71 -0.6 1,458,465 - +0.2 1,458,561 + -0.4 1,458,659 - +0.2 1,458,759 - -1.5 1,459,059 - -1.1 1,459,085 - -0.7 1,459,085 - -0.1 1,459,244 - BPHYT_RS26250 0.31 -0.1 1,459,244 - BPHYT_RS26250 0.31 +1.0 1,459,308 - BPHYT_RS26250 0.47 +0.5 1,459,464 + BPHYT_RS26250 0.84 +0.4 1,459,464 + BPHYT_RS26250 0.84 -0.9 1,459,465 - BPHYT_RS26250 0.84 +0.0 1,459,465 - BPHYT_RS26250 0.84 -1.1 1,459,467 - BPHYT_RS26250 0.85 +0.4 1,459,841 + BPHYT_RS26255 0.29 -1.0 1,459,900 + BPHYT_RS26255 0.34 +0.2 1,459,900 + BPHYT_RS26255 0.34 -0.5 1,459,936 + BPHYT_RS26255 0.38 -0.5
Or see this region's nucleotide sequence