Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25205

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25200 and BPHYT_RS25205 are separated by 4 nucleotidesBPHYT_RS25205 and BPHYT_RS25210 overlap by 4 nucleotidesBPHYT_RS25210 and BPHYT_RS25215 are separated by 73 nucleotides BPHYT_RS25200: BPHYT_RS25200 - (Fe-S)-binding protein, at 1,226,846 to 1,228,759 _RS25200 BPHYT_RS25205: BPHYT_RS25205 - electron transfer flavoprotein subunit alpha, at 1,228,764 to 1,229,945 _RS25205 BPHYT_RS25210: BPHYT_RS25210 - drug:proton antiporter, at 1,229,942 to 1,230,718 _RS25210 BPHYT_RS25215: BPHYT_RS25215 - (Fe-S)-binding protein, at 1,230,792 to 1,232,105 _RS25215 Position (kb) 1228 1229 1230Strain fitness (log2 ratio) -2 -1 0 1at 1228.092 kb on - strand, within BPHYT_RS25200at 1228.317 kb on - strand, within BPHYT_RS25200at 1228.437 kb on - strand, within BPHYT_RS25200at 1228.437 kb on - strand, within BPHYT_RS25200at 1228.463 kb on + strand, within BPHYT_RS25200at 1228.464 kb on - strand, within BPHYT_RS25200at 1229.198 kb on + strand, within BPHYT_RS25205at 1229.198 kb on + strand, within BPHYT_RS25205at 1229.199 kb on - strand, within BPHYT_RS25205at 1229.201 kb on - strand, within BPHYT_RS25205at 1229.316 kb on + strand, within BPHYT_RS25205at 1229.316 kb on + strand, within BPHYT_RS25205at 1229.700 kb on + strand, within BPHYT_RS25205at 1229.700 kb on + strand, within BPHYT_RS25205at 1230.455 kb on + strand, within BPHYT_RS25210

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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1,228,092 - BPHYT_RS25200 0.65 -1.5
1,228,317 - BPHYT_RS25200 0.77 -2.4
1,228,437 - BPHYT_RS25200 0.83 -1.5
1,228,437 - BPHYT_RS25200 0.83 +0.1
1,228,463 + BPHYT_RS25200 0.84 -1.2
1,228,464 - BPHYT_RS25200 0.85 -1.0
1,229,198 + BPHYT_RS25205 0.37 -0.8
1,229,198 + BPHYT_RS25205 0.37 -1.9
1,229,199 - BPHYT_RS25205 0.37 -0.7
1,229,201 - BPHYT_RS25205 0.37 -1.2
1,229,316 + BPHYT_RS25205 0.47 -1.1
1,229,316 + BPHYT_RS25205 0.47 -0.2
1,229,700 + BPHYT_RS25205 0.79 -1.2
1,229,700 + BPHYT_RS25205 0.79 -0.3
1,230,455 + BPHYT_RS25210 0.66 -0.9

Or see this region's nucleotide sequence