Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22485 and BPHYT_RS22490 are separated by 233 nucleotides BPHYT_RS22490 and BPHYT_RS22495 are separated by 222 nucleotides BPHYT_RS22495 and BPHYT_RS22500 are separated by 234 nucleotides
BPHYT_RS22485: BPHYT_RS22485 - NADP-dependent aryl-alcohol dehydrogenase, at 603,414 to 604,394
_RS22485
BPHYT_RS22490: BPHYT_RS22490 - hypothetical protein, at 604,628 to 605,701
_RS22490
BPHYT_RS22495: BPHYT_RS22495 - hypothetical protein, at 605,924 to 606,232
_RS22495
BPHYT_RS22500: BPHYT_RS22500 - transcriptional regulator, at 606,467 to 607,471
_RS22500
Position (kb) 604
605
606 Strain fitness (log2 ratio) -1
0
1 at 603.821 kb on - strand, within BPHYT_RS22485 at 603.822 kb on + strand, within BPHYT_RS22485 at 603.823 kb on - strand, within BPHYT_RS22485 at 603.911 kb on - strand, within BPHYT_RS22485 at 603.932 kb on - strand, within BPHYT_RS22485 at 603.952 kb on - strand, within BPHYT_RS22485 at 604.387 kb on + strand at 604.561 kb on + strand at 604.564 kb on - strand at 604.564 kb on - strand at 604.893 kb on + strand, within BPHYT_RS22490 at 604.894 kb on - strand, within BPHYT_RS22490 at 604.894 kb on - strand, within BPHYT_RS22490 at 604.986 kb on - strand, within BPHYT_RS22490 at 605.285 kb on + strand, within BPHYT_RS22490 at 605.285 kb on + strand, within BPHYT_RS22490 at 605.286 kb on - strand, within BPHYT_RS22490 at 605.484 kb on + strand, within BPHYT_RS22490 at 605.485 kb on - strand, within BPHYT_RS22490 at 605.603 kb on - strand at 606.392 kb on - strand at 606.629 kb on - strand, within BPHYT_RS22500 at 606.655 kb on - strand, within BPHYT_RS22500
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 603,821 - BPHYT_RS22485 0.41 +0.3 603,822 + BPHYT_RS22485 0.42 +1.2 603,823 - BPHYT_RS22485 0.42 +0.4 603,911 - BPHYT_RS22485 0.51 -0.6 603,932 - BPHYT_RS22485 0.53 -0.1 603,952 - BPHYT_RS22485 0.55 -0.1 604,387 + +0.4 604,561 + +0.4 604,564 - -0.2 604,564 - -0.9 604,893 + BPHYT_RS22490 0.25 -0.6 604,894 - BPHYT_RS22490 0.25 +0.4 604,894 - BPHYT_RS22490 0.25 -0.1 604,986 - BPHYT_RS22490 0.33 +0.0 605,285 + BPHYT_RS22490 0.61 -1.1 605,285 + BPHYT_RS22490 0.61 -1.6 605,286 - BPHYT_RS22490 0.61 -1.0 605,484 + BPHYT_RS22490 0.80 -0.3 605,485 - BPHYT_RS22490 0.80 -0.6 605,603 - +0.7 606,392 - -1.7 606,629 - BPHYT_RS22500 0.16 +0.4 606,655 - BPHYT_RS22500 0.19 -1.1
Or see this region's nucleotide sequence