Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22430 and BPHYT_RS22435 are separated by 10 nucleotides BPHYT_RS22435 and BPHYT_RS22440 are separated by 123 nucleotides
BPHYT_RS22430: BPHYT_RS22430 - succinate-semialdehyde dehydrogenase, at 586,887 to 588,347
_RS22430
BPHYT_RS22435: BPHYT_RS22435 - 4-aminobutyrate aminotransferase, at 588,358 to 589,641
_RS22435
BPHYT_RS22440: BPHYT_RS22440 - DNA-binding protein, at 589,765 to 591,270
_RS22440
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 587.452 kb on + strand, within BPHYT_RS22430 at 587.453 kb on - strand, within BPHYT_RS22430 at 587.453 kb on - strand, within BPHYT_RS22430 at 587.879 kb on + strand, within BPHYT_RS22430 at 587.879 kb on + strand, within BPHYT_RS22430 at 587.880 kb on - strand, within BPHYT_RS22430 at 588.007 kb on + strand, within BPHYT_RS22430 at 588.299 kb on - strand at 588.359 kb on + strand at 588.640 kb on + strand, within BPHYT_RS22435 at 588.752 kb on + strand, within BPHYT_RS22435 at 589.111 kb on + strand, within BPHYT_RS22435 at 589.388 kb on + strand, within BPHYT_RS22435 at 589.388 kb on + strand, within BPHYT_RS22435 at 589.389 kb on - strand, within BPHYT_RS22435 at 589.412 kb on + strand, within BPHYT_RS22435 at 589.646 kb on - strand at 589.696 kb on - strand at 589.696 kb on - strand at 589.696 kb on - strand at 589.706 kb on + strand at 589.706 kb on + strand at 589.707 kb on - strand at 589.707 kb on - strand at 589.708 kb on + strand at 589.832 kb on - strand at 589.960 kb on + strand, within BPHYT_RS22440 at 589.961 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 590.238 kb on + strand, within BPHYT_RS22440 at 590.239 kb on - strand, within BPHYT_RS22440 at 590.275 kb on + strand, within BPHYT_RS22440 at 590.418 kb on - strand, within BPHYT_RS22440
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 587,452 + BPHYT_RS22430 0.39 -0.3 587,453 - BPHYT_RS22430 0.39 +0.4 587,453 - BPHYT_RS22430 0.39 +0.8 587,879 + BPHYT_RS22430 0.68 -1.0 587,879 + BPHYT_RS22430 0.68 +0.6 587,880 - BPHYT_RS22430 0.68 +1.4 588,007 + BPHYT_RS22430 0.77 -0.1 588,299 - -0.6 588,359 + -0.2 588,640 + BPHYT_RS22435 0.22 +1.8 588,752 + BPHYT_RS22435 0.31 +1.8 589,111 + BPHYT_RS22435 0.59 -0.6 589,388 + BPHYT_RS22435 0.80 +0.4 589,388 + BPHYT_RS22435 0.80 -0.3 589,389 - BPHYT_RS22435 0.80 +0.9 589,412 + BPHYT_RS22435 0.82 +0.4 589,646 - +1.7 589,696 - +0.0 589,696 - +1.4 589,696 - -0.7 589,706 + +2.0 589,706 + +0.1 589,707 - +1.4 589,707 - -0.5 589,708 + +0.5 589,832 - +0.2 589,960 + BPHYT_RS22440 0.13 -0.6 589,961 - BPHYT_RS22440 0.13 +0.3 589,985 - BPHYT_RS22440 0.15 +0.4 589,985 - BPHYT_RS22440 0.15 -1.4 589,985 - BPHYT_RS22440 0.15 +0.1 590,238 + BPHYT_RS22440 0.31 -1.9 590,239 - BPHYT_RS22440 0.31 +0.1 590,275 + BPHYT_RS22440 0.34 -0.1 590,418 - BPHYT_RS22440 0.43 -0.0
Or see this region's nucleotide sequence