Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22095

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22090 and BPHYT_RS22095 are separated by 224 nucleotidesBPHYT_RS22095 and BPHYT_RS22100 are separated by 418 nucleotides BPHYT_RS22090: BPHYT_RS22090 - hypothetical protein, at 513,266 to 514,138 _RS22090 BPHYT_RS22095: BPHYT_RS22095 - porin, at 514,363 to 515,544 _RS22095 BPHYT_RS22100: BPHYT_RS22100 - ribonuclease BN, at 515,963 to 517,294 _RS22100 Position (kb) 514 515 516Strain fitness (log2 ratio) -2 -1 0 1at 513.394 kb on + strand, within BPHYT_RS22090at 513.395 kb on - strand, within BPHYT_RS22090at 513.609 kb on + strand, within BPHYT_RS22090at 513.654 kb on - strand, within BPHYT_RS22090at 513.696 kb on - strand, within BPHYT_RS22090at 513.855 kb on - strand, within BPHYT_RS22090at 513.855 kb on - strand, within BPHYT_RS22090at 513.878 kb on - strand, within BPHYT_RS22090at 513.911 kb on + strand, within BPHYT_RS22090at 513.911 kb on + strand, within BPHYT_RS22090at 514.136 kb on + strandat 514.422 kb on - strandat 514.428 kb on - strandat 514.474 kb on - strandat 514.474 kb on - strandat 514.515 kb on - strand, within BPHYT_RS22095at 514.541 kb on + strand, within BPHYT_RS22095at 514.568 kb on + strand, within BPHYT_RS22095at 514.602 kb on - strand, within BPHYT_RS22095at 514.602 kb on - strand, within BPHYT_RS22095at 514.607 kb on + strand, within BPHYT_RS22095at 514.607 kb on + strand, within BPHYT_RS22095at 514.607 kb on + strand, within BPHYT_RS22095at 514.608 kb on - strand, within BPHYT_RS22095at 514.608 kb on - strand, within BPHYT_RS22095at 514.652 kb on + strand, within BPHYT_RS22095at 514.670 kb on + strand, within BPHYT_RS22095at 514.671 kb on - strand, within BPHYT_RS22095at 514.713 kb on - strand, within BPHYT_RS22095at 514.760 kb on + strand, within BPHYT_RS22095at 514.806 kb on - strand, within BPHYT_RS22095at 514.917 kb on - strand, within BPHYT_RS22095at 514.949 kb on + strand, within BPHYT_RS22095at 514.950 kb on - strand, within BPHYT_RS22095at 515.012 kb on + strand, within BPHYT_RS22095at 515.012 kb on + strandat 515.013 kb on - strand, within BPHYT_RS22095at 515.013 kb on - strand, within BPHYT_RS22095at 515.013 kb on - strand, within BPHYT_RS22095at 515.054 kb on + strand, within BPHYT_RS22095at 515.055 kb on - strand, within BPHYT_RS22095at 515.200 kb on - strand, within BPHYT_RS22095at 515.432 kb on + strandat 515.433 kb on - strandat 515.459 kb on + strandat 515.523 kb on + strandat 515.567 kb on - strandat 515.592 kb on + strandat 515.592 kb on + strandat 515.760 kb on + strandat 515.760 kb on + strandat 515.760 kb on + strandat 515.761 kb on - strandat 515.796 kb on + strandat 515.797 kb on - strandat 515.805 kb on + strandat 515.805 kb on + strandat 515.805 kb on + strandat 516.064 kb on - strandat 516.489 kb on + strand, within BPHYT_RS22100at 516.489 kb on + strand, within BPHYT_RS22100

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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513,394 + BPHYT_RS22090 0.15 -1.2
513,395 - BPHYT_RS22090 0.15 +0.0
513,609 + BPHYT_RS22090 0.39 +0.7
513,654 - BPHYT_RS22090 0.44 +0.4
513,696 - BPHYT_RS22090 0.49 +0.3
513,855 - BPHYT_RS22090 0.67 -0.3
513,855 - BPHYT_RS22090 0.67 -0.2
513,878 - BPHYT_RS22090 0.70 +1.2
513,911 + BPHYT_RS22090 0.74 +0.7
513,911 + BPHYT_RS22090 0.74 -0.1
514,136 + -0.2
514,422 - -1.6
514,428 - -0.3
514,474 - -1.0
514,474 - -1.2
514,515 - BPHYT_RS22095 0.13 -0.7
514,541 + BPHYT_RS22095 0.15 +0.4
514,568 + BPHYT_RS22095 0.17 -1.6
514,602 - BPHYT_RS22095 0.20 -1.9
514,602 - BPHYT_RS22095 0.20 -1.4
514,607 + BPHYT_RS22095 0.21 +0.4
514,607 + BPHYT_RS22095 0.21 +1.0
514,607 + BPHYT_RS22095 0.21 -1.6
514,608 - BPHYT_RS22095 0.21 -0.9
514,608 - BPHYT_RS22095 0.21 -1.0
514,652 + BPHYT_RS22095 0.24 -0.6
514,670 + BPHYT_RS22095 0.26 -2.4
514,671 - BPHYT_RS22095 0.26 -1.8
514,713 - BPHYT_RS22095 0.30 -0.4
514,760 + BPHYT_RS22095 0.34 -0.5
514,806 - BPHYT_RS22095 0.37 -0.3
514,917 - BPHYT_RS22095 0.47 -1.3
514,949 + BPHYT_RS22095 0.50 -0.6
514,950 - BPHYT_RS22095 0.50 -0.8
515,012 + BPHYT_RS22095 0.55 -1.0
515,012 + +0.4
515,013 - BPHYT_RS22095 0.55 -1.5
515,013 - BPHYT_RS22095 0.55 -2.3
515,013 - BPHYT_RS22095 0.55 +0.4
515,054 + BPHYT_RS22095 0.58 -2.0
515,055 - BPHYT_RS22095 0.59 -1.1
515,200 - BPHYT_RS22095 0.71 -0.8
515,432 + -0.7
515,433 - -1.4
515,459 + -1.0
515,523 + +1.0
515,567 - -0.6
515,592 + -0.7
515,592 + -1.0
515,760 + +0.8
515,760 + -0.5
515,760 + -1.2
515,761 - +0.1
515,796 + -0.1
515,797 - +0.2
515,805 + +0.9
515,805 + +0.0
515,805 + +1.0
516,064 - -1.4
516,489 + BPHYT_RS22100 0.39 +0.6
516,489 + BPHYT_RS22100 0.39 -0.6

Or see this region's nucleotide sequence